Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2770 95.1 1e-14 >seq2770 Length=58540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| || || || || || ||||||||||| || ||| |||| || Sbjct 46344 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTC 46285 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||| || || || || || || || | ||||||||| | ||| | | ||||||||| Sbjct 46284 AAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTG 46225 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || ||||| ||| | | | || ||| || || || || | ||||| | | Sbjct 46224 GATCTTTGCTTTGA-CGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCT 46166 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| || ||||| ||||| ||||| Sbjct 46165 TTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | |||||| || || || ||| || || || || ||||| Sbjct 46593 CATGCCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATC 46534 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || |||| || || ||||| || ||||| || ||||||||||| || | Sbjct 46533 GGCAAGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGG 46474 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 ||| | | ||| || ||| |||||| |||| ||| | | | ||| || || | Sbjct 46473 GGGAATTCCCTCCTTATCCTGGATTTTGGCCTTGA-CGTTGTCGATCGTGTCAGATGATT 46415 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | || || | || || |||| || ||||||||||| ||||| Sbjct 46414 CAACTTCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429487438183430