Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2770 107 1e-18 seq3427 98.7 7e-16 seq2223 98.7 7e-16 >seq2770 Length=58540 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || || || || ||||| ||||| || || || | Sbjct 45907 ATGCAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCC 45966 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||||||||| | || ||||| || Sbjct 45967 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 46026 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||||| || |||| ||| ||| | | |||||||||| Sbjct 46027 CAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAAC 46086 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || |||||| | || || || | ||| | || || || Sbjct 46087 ATCCAGAAGGAATCCACACTCCACTTGGTGCTCAGGCTCCGTGGTGG 46133 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || ||||| |||||||| ||||| || || || | Sbjct 46135 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCC 46194 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||| || ||||||||||| | || || || || Sbjct 46195 GACACCATCGACAACGTCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCAG 46254 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||||| || |||| ||| ||| | | |||||||||| Sbjct 46255 CAGAGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAAC 46314 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 46315 ATCCAGAAGGAATCCAC 46331 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||| | || || || || || ||||| |||||||| || | Sbjct 46363 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAGACAATTACTCTTGAAGTTGAATCATCT 46422 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || || || || | || |||||||| Sbjct 46423 GACACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAG 46482 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| |||||||| |||||||| || |||| || || | | |||||||||| Sbjct 46483 CAGCGTCTAATCTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 46542 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 46543 ATCCAGAAGGAGTCGAC 46559 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||| | || |||||||| ||||| ||||| || || || || || ||||| ||||| | Sbjct 45668 AATTGTTGAATATGCAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGG 45727 Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 | || | | ||||| | || | | || || || || || |||||| | | Sbjct 45728 TCGAGAGCTCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTC 45787 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | || ||||| ||| | || || |||||||| || || || || |||| ||| || | | Sbjct 45788 CCCCGGATCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCG 45847 Query 23780 GCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||||||| || || || ||||| | ||||| || ||||| | || || || Sbjct 45848 CCGATTACAACATTCAGAAGGAATCCACCCTTCATTTGGTGCTAAGGCTCCGTGGTGG 45905 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| ||||| ||||| |||||| | || || || | | Sbjct 46818 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 46877 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||| ||||| | || ||||| || Sbjct 46878 GACACAATTGACAATGTCAAGGCTAAAA-TCCAAGACAAGGAAGGCATCCCTCCAGACCA 46936 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||| |||| || | || ||| | | |||||||| Sbjct 46937 GCAGCGTCTCATCTTTGCGGGGAAGCAATTGGAGGATGGTCGTACTCTTGCTGATTACAA 46996 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 46997 CATTCAGAAGGAGTCTAC 47014 >seq3427 Length=45480 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || ||||| || ||||||||||| ||||| | Sbjct 42735 AATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTC 42676 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | || | | || || |||||| | || ||||| | Sbjct 42675 TGATACCATTGACAATGTCAAGGCTAAGA-TCCAAGATAAGGAAGGTATCCCACCAGACC 42617 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || ||||| || || | | | ||||| | ||||||| Sbjct 42616 AGCAGAGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACA 42557 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 |||| || || ||||||||| | ||| Sbjct 42556 ACATTCAGAAGGAGTCCACACTTCAT 42531 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||| | || ||||| || || ||| | || || || || Sbjct 42051 ATGCAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCG 41992 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | |||| |||||| |||||||| ||| | || ||||| || Sbjct 41991 GATACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAG 41932 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| ||||||| | | ||||| | ||||||||| Sbjct 41931 CAGAGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAAC 41872 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 41871 ATTCAGAAAGAGTCTAC 41855 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || ||||| || || || || || || || | || Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTAC-CTTGAGGTAGAAAGCTCG 42448 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| |||||| ||||| ||||| | || ||||| || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || ||| ||||||| | | ||||||| ||||||||| Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| || | ||||| || Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGT 42299 >seq2223 Length=74567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| || || || || || || || || ||||| || | Sbjct 64066 AATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTC 64125 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | ||||| ||||| | || ||||| | Sbjct 64126 TGACACCATCGACAATGTCAAGGCTAAGA-TCCAGGACAAGGAAGGCAT-CCACCAGACC 64183 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 64184 AGCAACGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACA 64243 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||| ||||| || | || || || | || | |||||||| Sbjct 64244 ACATCCAAAAGGAGTCGACTCTTCACTTGGTGCTCAGACTTAGAGGAGGA 64293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337963832443880