Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1831 95.1 2e-14 >seq1831 Length=90912 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||| || | |||| |||||| | ||| |||| ||| || Sbjct 15806 CCCCCTTGATCAACATAACGGGCAGTATCATTAAAAACTCGTATCATAGGAACAATGCCA 15865 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||| ||| ||||||||| || | || ||||| || || || Sbjct 15866 TTTGATGTTCCATTTGTCCCACGAATATAACTCCCTGTGGCACGAATGTTGTGAACTGAG 15925 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || |||||| ||||| || || Sbjct 15926 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATG 15985 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| |||| | ||| || |||||| Sbjct 15986 CCTTCAATGCTATCATCTTTCATACACAAAAGGAAGCAGCTA 16027 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | ||| || | || ||||| ||||| |||||||| | ||| | || | || Sbjct 16154 GTTCCCGAATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACCGCTGAGACA-TAAAGTG 16212 Query 78459 -TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || || | ||||| ||||| | ||| || |||||||| || || || | |||||| Sbjct 16213 ATACGTCTTGATAGCAGATTCAACATCCTCTTTGTGAATTCCAACAGCAACTCTCATCAA 16272 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||||||||||| ||| | || ||||| | |||||| | || | Sbjct 16273 CATGTGTTGAGGTCTTTCAATGACCTTTCCTTGTACCTTCAAGAGGTATGACCTCTCGAG 16332 Query 78578 AGTTTTAAAACCAAAATA 78595 |||||||| |||||||| Sbjct 16333 GGTTTTAAAGCCAAAATA 16350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694572327870400