Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2223 152 1e-31 seq3427 149 1e-30 seq2770 140 7e-28 >seq2223 Length=74567 Score = 152 bits (168), Expect = 1e-31 Identities = 170/224 (76%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | |||||||| ||||| |||||||||||||||||||||| ||| Sbjct 64286 CTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGCTAGGGTT 64227 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | || || ||||| ||||| ||||||||||| || | |||||||| | | ||| | Sbjct 64226 CGGCCGTCCTCTAGCTGCTTT--CCGGCGAAGATGAGACGTTGCTGGTCTGGTG-GATGC 64170 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || || || || |||||| | || | | |||| ||| ||| || || | Sbjct 64169 CTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTA 64110 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| || || || || || |||||||||| ||||||| Sbjct 64109 GGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATT 64066 >seq3427 Length=45480 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||| ||||||||||||||||| |||||||| || |||||| Sbjct 42296 AGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCT 42355 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| |||||||| || |||||||| | | |||||||||||| ||| Sbjct 42356 TCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 42415 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| | || | | || || || ||||| ||||| ||||| || Sbjct 42416 TGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAAG-GTAATGGTC 42474 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| || | ||||| Sbjct 42475 TTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || ||||| || || ||||||||||| || ||||| || ||||| Sbjct 42523 AGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCC 42582 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| |||||||| ||||||||||| | | ||| |||||||| ||| Sbjct 42583 TCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCT 42642 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || |||||||| || || ||||| || || Sbjct 42643 TGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTC 42702 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || || || |||||||| || | |||||| |||| Sbjct 42703 TTTCCTGTAAGGGTCTTCACAAATATTTGCATTCCACCC 42741 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||||||||||||||| || ||||||||||| || ||||| || ||||| Sbjct 41839 GAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATC 41898 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| || || || || | |||||||||||| | | ||| || || || || Sbjct 41899 TTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTC 41958 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||||| || ||| | |||| | | || |||||||| || || | ||| || || Sbjct 41959 CTGAATTTTCGCCTTTACATTGTCTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGT 42018 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| || |||| |||||| Sbjct 42019 CTTTCCGGTCAAGGTCTTAACAAAGATCTGCAT 42051 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || |||||||||||||| || |||||||||||||| || | || || ||||| || Sbjct 42071 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCCTCG 42130 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || |||||||||||||| || |||||||| | | ||| || || || || ||| Sbjct 42131 AGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGA 42190 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || ||| | |||| | || || || ||||| || | ||| || || || Sbjct 42191 ATTTTCGCCTTTACATTGTCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATGGTCTTT 42250 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||||| |||| |||||| Sbjct 42251 CCAGTTAAGGTCTTCACAAAGATCTGCAT 42279 >seq2770 Length=58540 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || |||||||| || || ||||||||||| || | ||| | ||||| Sbjct 47029 AGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCC 46970 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||||| || ||||| || | ||||||||| | | ||| |||||||| ||| Sbjct 46969 TCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCT 46910 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | || | |||| || ||||| || || | ||| || ||| Sbjct 46909 TGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTT 46850 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| ||||| Sbjct 46849 TTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| ||||| || | || || || || || || ||||||||||||||||| | ||| | Sbjct 46125 GAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACG 46066 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||||||||| |||||||||||||| | | ||| ||| Sbjct 46065 TCCGTCCTCAAGTTGCTTT--CCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCT 46008 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || |||||| | || | | |||| ||| || || || || Sbjct 46007 TCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGG 45948 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || |||||||| ||||||| |||||| Sbjct 45947 GTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| ||||| || | || || || || || || ||||||||||||||||| | ||| | Sbjct 46353 GAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACG 46294 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||||||||| || ||||||||||||| | ||| ||| Sbjct 46293 TCCGTCCTCAAGTTGCTTT--CCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCT 46236 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || ||| |||||| | || | | |||| ||| || || || || Sbjct 46235 TCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGG 46176 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | |||||| ||||||| |||||| Sbjct 46175 GTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| || || || | |||||| || || || || || |||||||||||||| | |||| Sbjct 45897 GAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCG 45838 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || |||||||| ||||| | ||||||||| |||| | || ||||| Sbjct 45837 TCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGAATACCTTC 45778 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| || ||||| || || || || Sbjct 45777 CTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGT 45718 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || ||||| || ||||||| |||||| || Sbjct 45717 GATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATT 45676 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||||||||| | || | || || || | Sbjct 46569 CAAG-TGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGA 46511 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| ||||| || | |||||| || | | ||||| ||||| || || | Sbjct 46510 GTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGGA 46451 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||| | || | |||| || || |||||||||||||| || || | Sbjct 46450 TTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTTAC 46391 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| || |||| |||||| Sbjct 46390 CAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || || | || | || || || | Sbjct 46796 CAAG-TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCA 46738 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || || | |||||||||| || ||||||||||| || || Sbjct 46737 ACTGCTTT--CCAGCGAAAATCAGACGTTGCTGGTCCGGGGA-ATTCCTTCCTTGTCCTG 46681 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || | || | ||||||| ||||| || || || || || || || Sbjct 46680 AATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGTCTT 46621 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || || | |||||| Sbjct 46620 CCCGGTGAGGGTCTTGACAAAAATCTGCAT 46591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153656557214810