Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq3427 98.7 8e-16 >seq3427 Length=45480 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || || || ||||||||| || | || | | Sbjct 42506 ATGCAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTTGAGGTAGAAAGCTCG- 42448 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | ||||| |||||| ||||| ||||| | || || || Sbjct 42447 GATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 42388 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| ||||| | ||| || || |||||||||||| | ||| | || ||||| || Sbjct 42387 CAAAGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAAC 42328 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| || || || || ||||| ||| |||||||| | ||||||| Sbjct 42327 ATCCAAAAGGAGTCGACCCTTCATTTGGTGCTGCGTCTGAGGGGTGGCA 42279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421754085445360