Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2770 190 4e-43 seq3427 138 2e-27 seq2223 136 8e-27 >seq2770 Length=58540 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| || | ||| ||| || ||||||||||| || || Sbjct 46362 ACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 46303 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| ||||| || ||||| ||||||| | || ||||| || Sbjct 46302 AAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGG 46243 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || ||||| |||||||||||||| ||| | ||||| ||||| |||| |||||| Sbjct 46242 GATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 46183 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || ||||||||||||||||| |||||||| Sbjct 46182 CTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| || | || || || ||||||||||| || ||| Sbjct 46589 CCTCCACGGAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 46530 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| |||||||| ||||||||||| | ||| || || || ||| Sbjct 46529 AGGGTACGGCCGTCCTCGAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGA 46470 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || ||||| || || || ||| | ||||| ||||| || | ||| ||| Sbjct 46469 ATTCCCTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACT 46410 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||||||| ||||| |||||||| || |||||||| Sbjct 46409 TCAAGAGTAATTGTCTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| || | ||| ||| || ||||||||||| || || Sbjct 46134 ACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGC 46075 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| ||||| || ||||| ||||||| | || ||||| || Sbjct 46074 GAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 46015 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || ||||| |||||||| ||||| ||| | ||||| ||||| |||| |||||| Sbjct 46014 GATCCCTTCTTTGTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 45955 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||||||||| |||||||| Sbjct 45954 CTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCAT 45907 Score = 161 bits (178), Expect = 2e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | || |||| ||| | ||| ||| || || |||||||| || || Sbjct 45905 CCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCG 45846 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || ||||||||||||||||| | || || || ||| Sbjct 45845 AGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGGA 45786 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 ||||| ||||| || |||||||| || || ||| | ||||| ||||| | |||| ||||| Sbjct 45785 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAG-AGCTCTCGAC 45727 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 ||||| ||||| ||||| || || | ||| || ||||| |||||||| |||| Sbjct 45726 CTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATTCA 45674 Score = 141 bits (156), Expect = 2e-28 Identities = 149/192 (78%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||||||| ||||| || ||||| | || || || || || Sbjct 46780 TCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAA 46721 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| |||||| ||||| | ||||| || |||||||| || ||||| || || ||| | Sbjct 46720 ATCAGACGTTGCTGGTC-CGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTG 46662 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || ||| || || ||||| ||||||||||| || || | ||||| || Sbjct 46661 TCGATTGTGTCTGA-GCTCTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGAC 46603 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 46602 AAAAATCTGCAT 46591 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | || || || || |||||||| |||||| Sbjct 47044 CCACCACGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 46985 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | ||| ||||| |||||||| | ||| || ||||| || Sbjct 46984 AGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGG 46925 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || |||||||||||||| || || || || | || || ||||| | |||| || || Sbjct 46924 ATGCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAG-AGCTCTCCAC 46866 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| || || ||||| | ||||| ||||| || ||||| Sbjct 46865 CTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 >seq3427 Length=45480 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || ||||| | ||| || || || |||||||| ||||| Sbjct 42507 ACCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGC 42566 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | |||||||| ||||| || ||||||||||| | | || ||||| || Sbjct 42567 CAAAGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGG 42626 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||| ||||||||||| || || || | || || || || ||| || || Sbjct 42627 GATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAAC 42686 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||| || || | ||||| || ||||| |||||| Sbjct 42687 CTCGAGAGTGATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCATT 42735 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || ||||| || | |||||||| ||||| || ||||| ||| Sbjct 42089 TCCTTCTGGATGTTGTAATCTGCAAGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAG 42148 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||| ||||| || || ||||| ||||| || || || || ||||| | Sbjct 42149 ATAAGTCTTTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTG 42208 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || ||||| ||| || || | |||||| ||||| || || || ||||| || Sbjct 42209 TCTATTGTATCCGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACA 42268 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 42269 AAGATCTGCAT 42279 Score = 118 bits (130), Expect = 2e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || |||| ||| | || || |||||||||||||| ||||| Sbjct 42281 CCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCT 42340 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | |||||| || | ||| || ||||||||||| | | ||| ||||| || Sbjct 42341 AAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGG 42400 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| || || || ||||| | || || || ||||| ||| || Sbjct 42401 ATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACC 42460 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| || ||||| ||||| Sbjct 42461 TCAAG-GTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || ||||| ||||| | || | ||||| || | ||| ||||| ||||| Sbjct 42772 TCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAA 42831 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||||| || ||||| |||||||||||||||||||| || || || | Sbjct 42832 ATCAACCTCTGTTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTG 42891 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || ||| || || || |||||||| |||||||| || || || || || Sbjct 42892 TCTATGGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACA 42951 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 42952 AAGATTTGCAT 42962 >seq2223 Length=74567 Score = 136 bits (150), Expect = 8e-27 Identities = 146/192 (76%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 64256 TCCTTTTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAG 64197 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| ||||| || || || |||||||| |||||||| || || || | Sbjct 64196 ATGAGACGTTGCTGGTCTGGTGG-ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTG 64138 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| || || || || || || ||||| || || | || || ||| Sbjct 64137 TCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACG 64078 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 64077 AAGATCTGCATT 64066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046590199945940