Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2223 149 5e-31 seq2770 134 1e-26 seq3427 120 2e-22 >seq2223 Length=74567 Score = 149 bits (164), Expect = 5e-31 Identities = 173/230 (75%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||| ||||| | ||||| |||||| || |||||||||||||||||||||||| Sbjct 64293 TCCTCCTCTAAGTCTGAGCACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGC 64234 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || || |||| || |||||||| ||||| ||||| | ||| ||||| |||| || Sbjct 64233 TAGGGTTCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGTGG 64174 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287 | |||||||| ||| ||||| ||| || ||| | |||||||| | || || Sbjct 64173 -ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGT--CGATGGTGTCAGAAGACTCA 64117 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || ||||| ||||||||||| ||||| Sbjct 64116 ACCTCTAGGGTTATAGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 64067 >seq2770 Length=58540 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || || | ||||| ||| || ||| ||||| |||||||||||||| Sbjct 46137 CATACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAATC 46078 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| || |||| || || ||||| ||||| ||||||| | |||||| |||| Sbjct 46077 GGCGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGG 46018 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| |||| | ||| | |||||||||| |||| Sbjct 46017 GGGGATCCCTTCTTTGTCCTGGATCTT-AGCTTTGACGTTGTCGATGGTGTCGGAAGATT 45959 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || || || ||||| |||||||| |||||| Sbjct 45958 CGACCTCGAGGGTGATAGTCTTCCCGGTTAGAGTCTTAACGAAGATCTGCATG 45906 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || || | ||||| ||||| ||| ||||| || ||||||||||| Sbjct 45909 CATGCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATC 45850 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| || |||| || ||||||||||||||||||||||| | ||||||||| | Sbjct 45849 GGCGAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGG 45790 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| ||| ||||| ||| | | | |||||||| | | || Sbjct 45789 GGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTC 45730 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || || || || |||||||| ||||| Sbjct 45729 GACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCAT 45679 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || || | ||||| ||| || ||| ||||| |||||||||||||| Sbjct 46365 CATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 46306 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || || |||| || || ||||| ||||| ||||||| | |||||| || | Sbjct 46305 GGCAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGG 46246 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| ||||| | ||| | |||||||||| |||| Sbjct 46245 GGGGATCCCTTCTTTGTCCTGGATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAAGATT 46187 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || ||||||||||| || | ||||| |||||||| ||||| Sbjct 46186 CGACCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 46135 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| || ||||||||||| || || || | || ||| Sbjct 47026 ACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCC 46967 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||||| |||||||| | ||||||||| |||| ||| | |||||||| || Sbjct 46966 AATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGG 46907 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||| || ||| | || ||||| | | |||||||||| || || || | Sbjct 46906 ATTTTAGCCTTGACATTGT--CAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTT 46849 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| ||||||||||||||||||||||| Sbjct 46848 TGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||||||||| || || |||| || Sbjct 46572 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTC 46513 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||||||||| | |||||||||||||| || | || ||||| ||| Sbjct 46512 GAGTTGTTTTCCGGCAAAGATTAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 46453 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | | | || ||||| | ||||| || || | ||||| ||||| Sbjct 46452 GATTTTGGCCTTGACGTTGTCGATCGTGTCAGATGATTCAACTTCAAGAGTAATTGTCTT 46393 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||| ||||| Sbjct 46392 ACCAGTCAAGGTCTTAACAAAGATCTGCAT 46363 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || |||| | || ||||| ||| || || |||||| || |||||||| Sbjct 46823 TTGCATACCACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTA 46764 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| |||| |||| |||||| || || || |||| ||| ||||| || Sbjct 46763 GTCAGCAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTC 46704 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | |||||||| ||| ||||| ||| || ||| | || ||||| | | Sbjct 46703 CGG-GGAATTCCTTCCTTGTCCTGAATCTTGGCCTT-AACGTTGTCGATTGTGTCTGAGC 46646 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| | || |||||||| || ||||||||||| || || || |||||| Sbjct 46645 TCTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATG 46590 >seq3427 Length=45480 Score = 120 bits (132), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | |||||| |||||||| || |||||| |||||||||||||| Sbjct 42049 CATGCCACCCCTCAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATC 42108 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| | | || || || ||||| ||||| ||||| | | ||||| |||| Sbjct 42109 TGCAAGTGTCCTTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGTCTTTGCTGGTCTGG 42168 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || || || ||| || ||| ||| || ||| |||| || || | | | Sbjct 42169 TGGGATGCCCTCTTTGTCCTGAATTTTCGCCTTTACATTGT--CTATTGTATCCGAGCTT 42226 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||| || || |||||||| || | ||||||||| ||||| |||||| Sbjct 42227 TCTACCTCCAAAGTGATGGTCTTTCCAGTTAAGGTCTTCACAAAGATCTGCATG 42280 Score = 109 bits (120), Expect = 4e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||| ||||| || ||||||||||||||||||||| Sbjct 42277 CATGCCACCCCTCAGACGCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATC 42336 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | | | || |||| ||||| ||||||||||| | | ||||| |||| Sbjct 42337 AGCTAAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTTTGCTGGTCTGG 42396 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | |||||||| || || ||| ||| || ||| | || || || | | | Sbjct 42397 TGGGATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGT--CAATTGTATCCGAGCTT 42454 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || ||||| |||||||| || ||||||||||| || |||||||| Sbjct 42455 TCTACCT-CAAGGTAATGGTCTTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42506 Score = 102 bits (112), Expect = 6e-17 Identities = 168/239 (70%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || |||| | || ||| |||||||| || |||||| || || || Sbjct 42726 TATTTGCATTCCACCCCTCAAACGCAGCACGAGGTGAAGGGTTGACTCCTTCTGAATATT 42785 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| || | | | || |||| |||||||| ||||| ||||| | ||| || Sbjct 42786 GTAATCAGCCAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTG 42845 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCG 44278 ||||| || | || ||||| || ||||| ||| || ||| ||||||| || Sbjct 42846 ATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGT--CTATGGTATCA 42903 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| | || || ||||| || || | ||| ||||| ||||||||||| Sbjct 42904 GAACTCTCCACCTCAAGAGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATTTGCAT 42962 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| ||| |||||| || ||||||||||| || | | | || || Sbjct 42525 CACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTC 42584 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | | |||||| |||| || | ||||||||| || Sbjct 42585 GAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCTTG 42644 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | ||||| || | || ||||| | || || ||| Sbjct 42645 GATCTTAGCCTTGACATTGT--CAATGGTATCAGAACTCTCAACCTCGAGAGTGATGGTC 42702 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || ||||||||||| || |||||||| Sbjct 42703 TTTCCTGTAAGGGTCTTCACAAATATTTGCAT 42734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||| || || ||||||||||| || | | | || ||| Sbjct 41843 ACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCC 41902 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||| ||||| | |||||| |||| || | ||| || || ||| Sbjct 41903 AACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGA 41962 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||| || ||| ||||||| || | |||||||||| || || |||| Sbjct 41963 ATTTTCGCCTTTACATTGT--CTATGGTATCCGAACTCTCCACCTCCAAAGTTATGGTCT 42020 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || | |||||| || ||||| |||||| Sbjct 42021 TTCCGGTCAAGGTCTTAACAAAGATCTGCATG 42052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359941656174870