Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2770 199 1e-45 seq3427 165 2e-35 seq2223 158 3e-33 seq6102 89.7 1e-12 seq753 89.7 1e-12 >seq2770 Length=58540 Score = 199 bits (220), Expect = 1e-45 Identities = 168/205 (82%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| ||||||||||||||||| ||| || ||| Sbjct 46138 CAGATCTTCGTTAAGACTTTGACTGGAAAGACGATCACCCTCGAGGTCGAATCTTCCGAC 46197 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| |||||| |||||||||||||| ||||| ||||||||||| Sbjct 46198 ACCATCGACAACGTCAAAGCAAAGATCCAGGACAAAGAAGGGATCCCCCCGGACCAGCAG 46257 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || || || || ||| | |||||||||||||| ||| || Sbjct 46258 AGACTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTTGCCGATTACAACATC 46317 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 46318 CAGAAGGAATCCACCCTCCA-CTTG 46341 Score = 181 bits (200), Expect = 3e-40 Identities = 164/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || |||||||||||||| ||| || ||| Sbjct 45910 CAGATCTTCGTTAAGACTCTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGAC 45969 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct 45970 ACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAAGGGATCCCCCCAGACCAGCAG 46029 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||||||||| || || || || ||| | ||||| |||||||| ||| || Sbjct 46030 AGGCTGATCTTCGCCGGAAAGCAACTTGAGGACGGACGTACTCTCGCCGATTACAACATC 46089 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 46090 CAGAAGGAATCCACACTCCA-CTTG 46113 Score = 168 bits (186), Expect = 2e-36 Identities = 162/205 (79%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || || |||||||||||||||||||| ||||||||| Sbjct 46594 CAGATTTTTGTCAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGAGCTCAGAC 46653 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| |||||||| || |||||||||||| Sbjct 46654 ACAATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGAATTCC-CCGGACCAGCAA 46712 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||| | || || || | || ||||| || || ||| | Sbjct 46713 CGTCTGATTTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACCCTTGCTGACTACAACATT 46772 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 46773 CAGAAGGAGTCGACTCTGCA-CTTG 46796 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || || || |||||||||||||| || ||||| ||| Sbjct 45682 CAGATCTTCGTAAAAACTCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCTGAC 45741 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||| || ||||| || || ||||| ||||| Sbjct 45742 ACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCGGATCAGCAG 45801 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| || ||||| || || ||| | || || |||||||| ||| | Sbjct 45802 AGGTTGATCTTTGCCGGGAAGCAGCTTGAGGACGGACGAACCCTCGCCGATTACAACATT 45861 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||| || || ||| Sbjct 45862 CAGAAGGAATCCACCCTTCAT 45882 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || || || || || ||| || ||| Sbjct 46366 CAGATCTTTGTTAAGACCTTGACTGGTAAGACAATTACTCTTGAAGTTGAATCATCTGAC 46425 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || ||||| || || ||||| || || || ||||| Sbjct 46426 ACGATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 46485 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||||||||| ||||| || || | || ||||||||||| ||| || Sbjct 46486 CGTCTAATCTTTGCCGGAAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAACATC 46545 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 46546 CAGAAGGAGTCGACTCTCCA-CTTG 46569 >seq3427 Length=45480 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || |||||||| || ||||| |||||||| || || || || Sbjct 42731 CAAATATTTGTGAAGACCCTTACAGGAAAGACCATCACTCTCGAGGTTGAGAGTTCTGAT 42672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || || || ||||| ||||| || |||||||| Sbjct 42671 ACCATTGACAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAGCAG 42612 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || || ||||| |||||||||||| | || ||||| ||| | Sbjct 42611 AGACTTATCTTTGCCGGTAAGCAACTCGAGGATGGAAGGACTTTGGCTGATTACAACATT 42552 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| ||||| || Sbjct 42551 CAGAAGGAGTCCACACTTCATCTCGT 42526 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || ||||| || ||||| | ||||| |||||||| || Sbjct 42276 CAGATCTTTGTGAAGACCTTAACTGGAAAGACCATCACTTTGGAGGTAGAAAGCTCGGAT 42217 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || |||||||||||||| || ||||| || ||||||||| Sbjct 42216 ACAATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCACCAGACCAGCAA 42157 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||||| || || ||||| ||||||||||| ||||| ||||| ||| || Sbjct 42156 AGACTTATCTTCGCCGGTAAGCAACTCGAGGATGGAAGGACACTTGCAGATTACAACATC 42097 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || || || || || || || || ||| | || || Sbjct 42096 CAGAAGGAGTCTACTCTTCACCTCGTGTTGCGTCTGAG 42059 Score = 156 bits (172), Expect = 1e-32 Identities = 156/201 (78%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || |||||||| || || ||| | ||||| |||||||| || Sbjct 42503 CAAATATTTGTGAAGACCCTTACAGGAAAGACCATTACCTT-GAGGTAGAAAGCTCGGAT 42445 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 42444 ACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 42385 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || || | |||||||| |||||| | || ||||| ||| || Sbjct 42384 AGACTTATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTTTAGCTGATTACAACATC 42325 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || || ||| Sbjct 42324 CAAAAGGAGTCGACCCTTCAT 42304 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || ||||| || || || | |||||||| || || || Sbjct 42048 CAGATCTTTGTTAAGACCTTGACCGGAAAGACCATAACTTTGGAGGTGGAGAGTTCGGAT 41989 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || |||||||||||||| || ||||| || |||||||| Sbjct 41988 ACCATAGACAATGTAAAGGCGAAAATTCAGGACAAAGAGGGTATCCCACCAGACCAGCAG 41929 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || |||||| | |||||||| |||||| | || ||||| ||| | Sbjct 41928 AGGTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTAGGACTTTGGCTGATTACAACATT 41869 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || || |||||| Sbjct 41868 CAGAAAGAGTCTACTCTTCACCTTGTT 41842 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | || || || || ||||| || |||||||| || || || Sbjct 42959 CAAATCTTTGTGAAAACCTTAACTGGTAAGACCATCACTCTTGAGGTGGAGAGTTCTGAT 42900 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| || ||||| || || || || || || || || Sbjct 42899 ACCATAGACAATGTTAAGGCTAAGATCCAAGACAAGGAGGGGATTCCCCCAGATCAACAG 42840 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || || || | ||||||||||||||| | || ||||| || | Sbjct 42839 AGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAATATT 42780 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || || || Sbjct 42779 CAGAAGGAGTCAACCCTTCACCTCGT 42754 >seq2223 Length=74567 Score = 158 bits (174), Expect = 3e-33 Identities = 167/219 (76%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 64070 CAGATCTTCGTGAAAACCCTAACAGGGAAGACTATAACCCTAGAGGTTGAGTCTTCTGAC 64129 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| |||| || ||||||||| Sbjct 64130 ACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCA-CCAGACCAGCAA 64188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || || || | || || |||||||| ||| || Sbjct 64189 CGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGATTACAACATC 64248 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | || | ||||| ||| Sbjct 64249 CAAAAGGAGTCGACTCTTCACTTGGTGCTCAGACTTAGA 64287 >seq6102 Length=18543 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || |||||||||||||| | | |||||||||||||| ||||| |||||||| | Sbjct 17223 AGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGTCG 17282 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||| ||||| ||| |||| |||| Sbjct 17283 CACTCTTGCTGATTACAACATCCAGAAAG 17311 >seq753 Length=178373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || |||||||||||||| | | |||||||||||||| ||||| |||||||| | Sbjct 81384 AGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAAGATGGTCG 81443 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||||||| ||||| ||| |||| |||| Sbjct 81444 CACTCTTGCTGATTACAACATCCAGAAAG 81472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203559852625340