Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cannabis_20sativa_20[genbank_20GCA_5F001865755.1_202016-11-03] 11,110 sequences; 585,823,666 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2770 127 2e-24 >seq2770 Length=58540 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||||| || ||||||||||||||| ||||| | |||||||| | Sbjct 46805 ACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACC 46746 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 ||| || | |||||| || ||||| ||||| || || ||||||| ||||| | ||||| Sbjct 46745 GTCCTCCAACTGCTTTCCAGCGAAAATCAGACGTTGCTGGTCCG-GGGAATTCCTTCCTT 46687 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCG 41822 |||| ||| | || || | |||| | | | ||||| ||| ||||||||| | | Sbjct 46686 GTCC-TGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCT---CTCCACCTCGAGGG 46631 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| || || || || ||||| || |||||||||||| Sbjct 46630 TGATCGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCATG 46590 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || ||||| ||| || ||| |||||||||||||| || |||| Sbjct 45906 GCCACCACGGAGCCTTAGCACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGC 45847 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || |||||||| ||||| || |||| | ||| || |||| ||| Sbjct 45846 GAGGGTTCGTCCGTCCTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGATCCGGGGG 45787 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || | ||||| ||| || | || || | ||| | | | ||||| ||| || Sbjct 45786 AATACCTTCCTTATCC-TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCT---CT 45731 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | ||||| | || || || || || || || || |||||||| |||||||| || Sbjct 45730 CGACCTCGAGGGTGATGGTCTTGCCGGTTAGAGTTTTTACGAAGATCTGCATATT 45676 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| || || | Sbjct 47044 CCACCACGAAGACGAAGAACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 46985 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||||| || || || || || ||||| ||||| | || Sbjct 46984 AGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGG 46925 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||| | || |||| || | || | | | ||||| ||| ||| Sbjct 46924 ATGCCTTCCTTGT-CTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCT---CTC 46869 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 46868 CACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 46818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462239797532000