Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq279 163 3e-35 seq339 145 8e-30 >seq279 Length=1218690 Score = 163 bits (180), Expect = 3e-35 Identities = 495/746 (66%), Gaps = 23/746 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||||||||| ||||| ||||| || || || | || || ||| | Sbjct 625424 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTGGTCTTCCCTTGAAGCGAGATAAGTT 625365 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| |||||||||||||||| | | | ||| |||||| || | | | | Sbjct 625364 CCATCCAATCAAAAGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAGAA 625305 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||||||| || ||||| || | ||| || || |||||| || | | || Sbjct 625304 GCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCA-AC 625246 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | ||||| || || || ||| || | ||| || | || || || | || Sbjct 625245 GCGCAAGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCCACAGCGTCGCACACGAT 625187 Query 16912 --ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 ||| || || || ||| | | ||| || || | | || ||||| ||| Sbjct 625186 CGACTTC--ACGCGCTCTTCGCTAAGCTTCGTTTTGAGGAGTGTGTAGATAAGACACGCG 625129 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 || ||||| ||||| || ||||||| ||| |||||||| || || || ||||| ||| Sbjct 625128 AAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGC 625069 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || |||||||||||| | ||| || || | ||| || || ||||| ||||| Sbjct 625068 ATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCT 625009 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || ||| | || || || | | |||||| ||| | ||| | || || |||||| Sbjct 625008 TCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGT--CG-ATCCAT 624952 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA---A 17205 ||| | |||||| ||||| | | | ||| ||||| || || || | || | Sbjct 624951 TTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGAGA 624892 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| || ||| ||| | || || ||||||| || || || ||||| || Sbjct 624891 TGGTCTCTCTCTT---TGT-TGTCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTC 624836 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTT 17324 |||||||| ||||| || || ||||| || ||||| |||||| || || |||| | || Sbjct 624835 AGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTT 624777 Query 17325 GAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 | || || || | ||| || || ||||| || ||||| |||||| || ||| Sbjct 624776 GGACATCGGACAT-GAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCAGCG 624718 Query 17384 AAAAACGCCAATATATGCTTAATGAA 17409 || || || | | || || ||||| Sbjct 624717 AAGAAAGCGAGGACGTGTTTGATGAA 624692 >seq339 Length=148954 Score = 145 bits (160), Expect = 8e-30 Identities = 416/628 (66%), Gaps = 25/628 (4%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||||||||| ||||| |||||||| || || | || || ||| | Sbjct 23074 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTAGTCTTCCCTTGAAGCGAGATAAGTT 23015 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| |||||||||||||||| | | | || |||||| || | | | | Sbjct 23014 CCATCCAATCAAAAGGATTAGTCACACCGTACACCTTCCCGTACCCAAGCGCACCCAAAA 22955 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||||||| || ||||| || | ||| || || |||||| || | | || Sbjct 22954 GCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCA-AC 22896 Query 16854 GTACCGG-AAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | || ||| || || | ||| || | ||| || | ||||| || || Sbjct 22895 GCGCAGGGAAGCGCGTCGCAAACAAACTCCCT-CTCGATCTCCACCGCGTCGC-----AT 22842 Query 16912 ACTAGCAACT-----CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 || | | ||| || || ||| | | ||| || | | | || ||||| Sbjct 22841 ACGATCGACTTCACGCGCTCTTCGCTAAGCTTCGTTTTGAGGAGCGTGTAGATAAGACAC 22782 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 ||||| ||||| ||||| || ||||||| ||| | |||||| || || || ||||| Sbjct 22781 GCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCA 22722 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 ||||| |||||||||||| | ||| || || | ||| || || ||||| ||| Sbjct 22721 GGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATA 22662 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | || || || | | |||||| ||| | ||| | || || ||| Sbjct 22661 CCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGT--CG-ATC 22605 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA- 17204 |||||| | |||||| ||||| | | | |||| |||||||| || || | || Sbjct 22604 CATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCGCACGGAAG 22545 Query 17205 --ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || || ||||| || ||| ||| | || || ||||||| ||| || || ||||| Sbjct 22544 AGATGATCTCTCTCTT---TGT-TGTCTTTGATGTAAGTATCGAGGAGAAGACTATACAT 22489 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATC 17290 |||||||| || ||||| || || ||| Sbjct 22488 CTCGGAGTGGATATTCTCAATCGCGATC 22461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517492642146480