Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq279 147 2e-30 seq339 123 3e-23 >seq279 Length=1218690 Score = 147 bits (162), Expect = 2e-30 Identities = 487/744 (65%), Gaps = 19/744 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||||||||| ||||||||||| || || || | | || ||| || Sbjct 625424 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTGGTCTTCCCTTGAAGCGAGATAAGTT 625365 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| |||||||| | | | |||| |||||| || | | | Sbjct 625364 CCATCCAATCAAAAGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAGAA 625305 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGT 16090 ||||| |||||||| || ||||| |||| ||| || || || || || | || Sbjct 625304 GCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCAACG 625245 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || | ||||| || | | ||| | || ||| | || || || | ||| Sbjct 625244 CGCAA-GGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACAGCGTCGCACACGATC 625186 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTT--AGGTGTTTAAACATTAGACACGCGA 16208 | | || ||| | | | |||| ||| || | | || |||||||||| Sbjct 625185 GACTTCACGCGCTCTTCG--CTAAGCTTCGTTTTGAGGAGTGTGTAGATAAGACACGCGA 625128 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 ||||||| |||| |||||||||| ||| |||||||| || ||||||||||| |||| Sbjct 625127 AGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAACCCAGGCA 625068 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCT 16328 | |||||||||||| | |||||| || | | || || || ||||| ||||| | Sbjct 625067 TGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATACCTT 625008 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATCTTTATTACGAATCC 16385 |||| | || ||||| | | |||||| ||| | || || ||| | || |||| Sbjct 625007 CAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAG-ATCCGT----CG-ATCC 624954 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 ||||| |||| | ||||| | | |||| ||||| || || || || | Sbjct 624953 ATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACGGAAGA 624894 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | ||| | || | | || | || || ||||| | || | ||| ||||| || | Sbjct 624893 GATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTCAG 624834 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCTATTTGT 16564 ||||||| ||||| || || ||||| || || ||| ||||| || ||||||| | ||| Sbjct 624833 AGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACTTGG 624775 Query 16565 ACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 || || || | || || || || ||||| ||||||||||| ||||| || Sbjct 624774 ACATCGGACAT-GAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCAGCGAA 624716 Query 16624 AAACGCCAATATGTGCTTAATGAA 16647 || || | | ||| || ||||| Sbjct 624715 GAAAGCGAGGACGTGTTTGATGAA 624692 >seq339 Length=148954 Score = 123 bits (136), Expect = 3e-23 Identities = 304/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||| | ||||||||| |||||||||||||| || || | | || ||| || Sbjct 23074 TTTGGTAATCGCCAACGCGTTTCTCGAAGAAGTTAGTCTTCCCTTGAAGCGAGATAAGTT 23015 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| ||||||| |||||||| | | | ||| |||||| || || | | | Sbjct 23014 CCATCCAATCAAAAGGATTAGTCACACCGTACACCTTCCCGTACCCAAG---CGCACCCA 22958 Query 16032 AT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | ||||| |||||||| || ||||| |||| ||| || || || || || | | Sbjct 22957 AAAGCCTATCCGCTACAAACTCAATATACTGACTCATCAAATCCTGGTTCATCCCAACCA 22898 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || | ||||| || | | ||| | || ||| | ||||| || | | Sbjct 22897 ACGCGCAG-GGAAGCGCGTCGCAAACAAACTCCCTCTCGATCTCCACCGCGTCGCATACG 22839 Query 16148 ATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTT--AGGTGTTTAAACATTAGACACG 16205 || | | || ||| | | | |||| ||| | | | || ||||||| Sbjct 22838 ATCGACTTCACGCGCTCTTCG--CTAAGCTTCGTTTTGAGGAGCGTGTAGATAAGACACG 22781 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 |||||||||| |||| |||||||||| ||| | |||||| || ||||||||||| | Sbjct 22780 CGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAG 22721 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| |||||||||||| | |||||| || | | || || || ||||| |||| Sbjct 22720 GCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAAGATAC 22661 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 | |||||| | || ||||| | | |||||| ||| Sbjct 22660 CTTCAACACAAGCGAAAGCAACGATTCGTTCAGCG 22626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511362069521520