Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq674 132 3e-26 seq248 129 4e-25 seq165 89.7 4e-13 seq180 84.2 2e-11 >seq674 Length=261080 Score = 132 bits (146), Expect = 3e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| |||||||||| | Sbjct 144365 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 144424 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | ||||| || ||| Sbjct 144425 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 144484 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | |||||||| |||||| || || Sbjct 144485 GAACGTTGATACATTTGACACGAGAG 144510 >seq248 Length=403725 Score = 129 bits (142), Expect = 4e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| |||||| ||||||||| || ||||| || ||||| |||||||||| | Sbjct 23607 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 23548 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | ||||| ||| |||||||||||| ||||| || | ||||| || ||| Sbjct 23547 ATGCAAGTAAGAAGAGCGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 23488 Query 101828 GATCTTTGATACAGTTGACAGGAAAG 101853 || | |||||||| |||||| || || Sbjct 23487 GAACGTTGATACATTTGACACGAGAG 23462 >seq165 Length=664114 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | |||||||| | |||||| || |||||||||||||| || || | Sbjct 156171 GACGTGAGCGAGAATGCAAGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 156230 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||| | ||||| |||||||| Sbjct 156231 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 156290 Query 101875 TTGA 101878 ||| Sbjct 156291 CTGA 156294 >seq180 Length=4117863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||| ||||| | ||||| || | |||||| || |||||||||||||| || || | Sbjct 3608113 GACGTGAGCGAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 3608172 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||| | ||||| |||||||| Sbjct 3608173 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 3608232 Query 101875 TTGA 101878 ||| Sbjct 3608233 CTGA 3608236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361215159096686