Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq279 141 1e-28 seq140 86.0 7e-12 seq191 82.4 9e-11 >seq279 Length=1218690 Score = 141 bits (156), Expect = 1e-28 Identities = 395/599 (66%), Gaps = 13/599 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| |||||||||| || ||||||| | || | |||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || || || || |||||||| || ||||| || ||| || ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT--GT 24311 || ||||| || || || |||| | || ||| | | | ||| || || Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAA----GGTCTGAGATCCGT 624960 Query 24312 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| || ||||| | || ||||| |||||||| || ||||| || ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||||||| || | | || || | ||||| | || ||||| | | ||||||||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACA 624840 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || || || || || ||||| || || || || ||||||||| | ||||| | | Sbjct 624839 TCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 624780 Query 24490 TCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 || || || ||| || || ||| | ||| || || || ||||| ||| Sbjct 624779 CTTGGACATC-GGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCA 624721 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT-TTATTC 24605 || || || || | || ||||| || || | |||| | | || | | || | | Sbjct 624720 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 624661 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 ||||| | | |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 624660 CAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 624601 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 || || ||||| | |||||| | | || || ||||| || ||| ||||| | ||| Sbjct 624600 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 624542 >seq140 Length=1024829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 || |||| ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 >seq191 Length=957377 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 53684 TCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 ||| |||||||| | |||||||||||||| |||||||| || ||| || | | | Sbjct 347411 TCTCTTACAAACCGGGGTAATGCAATAGATGCAAGATTACACACAGCTGTTTCTGTTGGA 347352 Query 53744 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 53803 | |||| || || || ||||| | || | |||||||||| || | ||||||| Sbjct 347351 CTTGTGTATTCAATGATTTCGGTGCATAAGTTGGAAGACTTGATGGTACCCAGATTTTGT 347292 Query 53804 TGATTACTCTTTTTGTTACACGCATCCT 53831 ||||| || || ||||||||| ||||| Sbjct 347291 TGATTGCTTTTCCTGTTACACGAATCCT 347264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593660847437280