Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq233 95.1 1e-14 seq267 89.7 4e-13 seq281 86.0 5e-12 seq75 86.0 5e-12 seq325 84.2 2e-11 >seq233 Length=166549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| || || | | Sbjct 103320 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 103379 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| || || ||||| | || ||||| Sbjct 103380 GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCAG 103439 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || ||||| || || ||| || |||| ||||||||| Sbjct 103440 CAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAAT 103499 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| ||||| ||| |||| | | ||| |||| || Sbjct 103500 ATCCAGAAGGAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGG 103546 >seq267 Length=1500311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||||||||||||||| || || || | | Sbjct 617730 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAAACCATCACTCTAGAGGTCGAGAGCTCT 617671 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| || ||| || |||||||| | | || ||| Sbjct 617670 GATACGATTGATAACGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCACACCGGACCAA 617611 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||||||||| || |||||||| |||||| ||| | || ||||||||| Sbjct 617610 CAGAGACTTATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCAGATTACAAT 617551 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||| ||||| ||||||||| Sbjct 617550 ATCCAGAAAGAATCAACTCTTCAC 617527 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | ||||| | || |||||||||||||| ||| ||| | || Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || || || || ||||| | || || || Sbjct 618126 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAG 618067 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || |||||||||||||| ||||| ||||| |||||| || | || | || ||||||| Sbjct 618066 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACAC--TTGCGGATTACA 618009 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | || ||||| || || || || ||| |||| Sbjct 618008 ACATCCAGAAAGAGTCAACACTACACTTGGT 617978 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || ||||||||||| || || |||||||| |||||| | || |||| || Sbjct 618528 GACCAGCAGAGACTTATCTTCGCTGGTAAACAACTTGAAGATGGCCGTACATTGGCTGAC 618469 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||||| || ||||| ||| |||| Sbjct 618468 TACAATATTCAGAAGGAGTCAACTCTACACTTGGT 618434 >seq281 Length=1304507 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || ||||||||||| || |||||||| || || ||||| ||| Sbjct 309978 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 310037 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| |||| |||||||| || ||||| || ||||||||||| Sbjct 310038 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCA 310087 >seq75 Length=1220249 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || ||||||||||| || |||||||| || || ||||| ||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| |||| |||||||| || ||||| || ||||||||||| Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCA 48649 >seq325 Length=1091643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | | || || || |||||||||||||| || || ||||| ||| Sbjct 551704 GATAAGGAAGGTATTACTCCGGACCAGCAGAGACTTATCTTTGCTGGTAAGCAACTTGAA 551763 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| ||| |||| |||||||||||||| ||||| || ||||| ||| |||| Sbjct 551764 GATGGTCGTACTTTGGCGGATTACAATATTCAAAAGGAGTCAACTCTACACTTGGT 551819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428293266255830