Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq325 84.2 2e-11 seq134 84.2 2e-11 >seq325 Length=1091643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | | || || || |||||||||||||| || || ||| | ||| Sbjct 551704 GATAAGGAAGGTATTACTCCGGACCAGCAGAGACTTATCTTTGCTGGTAAGCAACTTGAA 551763 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| ||| |||| |||||||||||||||||||| || ||||| ||| |||| Sbjct 551764 GATGGTCGTACTTTGGCGGATTACAATATTCAAAAGGAGTCAACTCTACACTTGGT 551819 >seq134 Length=106205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||||||||| || || || |||||| || || | || Sbjct 48231 ATGCAAATCTTTGTGAAAACATTGACAGGGAAGACTATTACCTTGGATGTTGAGAGCTCA 48172 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| || ||| || ||||| || | || ||| || Sbjct 48171 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 48112 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||||||||||||| || ||||| | || || ||| |||| |||||||| Sbjct 48111 CAGAGACTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGGACTTTGGCTGATTACAAC 48052 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||| ||||| ||| |||| Sbjct 48051 ATTCAAAAGGAATCAACTCTCCACTTGGT 48023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410755816087004