Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq674 95.1 8e-15 seq248 95.1 8e-15 >seq674 Length=261080 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || ||||| || | | Sbjct 144365 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 144424 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | ||||| ||| |||||||||||| ||||| || || ||||| || ||| Sbjct 144425 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 144484 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | |||||| | ||||| || || | || || | |||| ||||| Sbjct 144485 GAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCGCATAGAACTG 144534 >seq248 Length=403725 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| |||| | || ||||| || |||||||| | || ||||| || | | Sbjct 23607 TGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTGCACACATGAGCAAGC 23548 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || ||||| | |||| ||| |||||||||||| ||||| || || ||||| || ||| Sbjct 23547 ATGCAAGTAAGAAGAGCGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCTGCT 23488 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 || | |||||| | ||||| || || | || || |||||| ||||| Sbjct 23487 GAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAGAACTG 23438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346749402444020