Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq384 98.7 1e-15 seq190 93.3 6e-14 seq60 89.7 8e-13 seq411 86.0 9e-12 >seq384 Length=798633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | ||| | || | || |||||||| || || ||||||||| Sbjct 646546 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 646487 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||| ||||| || || | ||| || ||||||||||| Sbjct 646486 AGCGTTCGACCATCCTCAAGCTGTTTGCCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 646427 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| || |||||||| || ||| Sbjct 646426 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATTGTGTCTGAACTCTCGACT 646367 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||||||| || | || || | |||||| ||||| Sbjct 646366 TCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 646320 >seq190 Length=891836 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | ||| | || | || |||||||| || || ||||||||| Sbjct 382178 CCACCTCTTAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 382119 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | || || | ||||| ||||| || || | ||| || ||||||||||| Sbjct 382118 AGCGTTCGACCTTCCTCAAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 382059 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| || |||||||| || ||| Sbjct 382058 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATTGTGTCTGAACTCTCGACT 381999 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||||||| || | || || | |||||| ||||| Sbjct 381998 TCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 381952 >seq60 Length=318476 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | ||| || ||||| ||||| || || | Sbjct 55850 CCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGCT 55909 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| ||||||||||| || ||||| || | ||| ||||||||||| || Sbjct 55910 AGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGG 55969 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| |||||||| || Sbjct 55970 ATTCCCTCTTTATCCTG 55986 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | || || ||||| || || ||||||| Sbjct 56078 CCACCTCTTAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 56137 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| |||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 56138 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 56197 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 56198 ATGCCTTCCTTGTCCTG 56214 >seq411 Length=621170 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||||| | ||| || ||||| ||||| || || | | Sbjct 568758 CCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGCA 568699 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||| || || |||||||| || | ||| ||||||||||| || Sbjct 568698 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGTCTCTGCTGATCCGGTGGG 568639 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| |||||||| || Sbjct 568638 ATTCCCTCTTTATCCTG 568622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743450318661120