Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq380 116 2e-21 seq69 116 2e-21 seq6139 109 4e-19 seq99 109 4e-19 seq177 100 2e-16 seq244 95.1 8e-15 seq240 95.1 8e-15 seq280 93.3 3e-14 seq525 86.0 4e-12 seq454 82.4 5e-11 seq270 82.4 5e-11 >seq380 Length=167695 Score = 116 bits (128), Expect = 2e-21 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || ||| ||||| ||||||||||| | ||| ||| |||| Sbjct 104832 AGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCGTCT 104891 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| || | ||||||||||| || ||| | || |||||||| Sbjct 104892 TCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTC 104950 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| || ||||| | || | | |||| || | ||| ||||| || | || |||| Sbjct 104951 TTGGATC-TTCGCTTTCACATTGTCGATCGTGTCTGACGACTCGACCTCTAGGGTTATGG 105009 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || || || || |||||||| |||||||||||| Sbjct 105010 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 105044 >seq69 Length=1777342 Score = 116 bits (128), Expect = 2e-21 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || ||| ||||| ||||||||||||| ||| ||| |||| Sbjct 335996 AGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCT 336055 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || ||||| || | ||||||||||| || ||| | || |||||||| Sbjct 336056 TCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTC 336114 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| || ||||| | || | | |||| || | ||| || || || | || |||| Sbjct 336115 TTGGATC-TTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACCTCTAGGGTTATGG 336173 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || || || || |||||||| |||||||||||| Sbjct 336174 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 336208 >seq6139 Length=4094 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| ||||||||||| | | Sbjct 552 CCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 611 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||||||||| || ||||| || |||| |||||| || ||| Sbjct 612 AAGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 671 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 672 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACC 731 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 732 TCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 779 >seq99 Length=1465915 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| ||||||||||| | | Sbjct 434838 CCACCACGGAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 434897 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||||||||| || ||||| || |||| |||||| || ||| Sbjct 434898 AAGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 434957 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 434958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACC 435017 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 435018 TCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 435065 >seq177 Length=445524 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| ||||||||||| | | Sbjct 392007 CCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 391948 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || || | ||||| || ||||| || |||| |||||| ||| ||| Sbjct 391947 AAGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCGGGGGGA 391888 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||| || Sbjct 391887 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAGAGCTTTCCACC 391828 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 391827 TCGAGGGTGATAGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCATC 391780 >seq244 Length=507168 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || |||| ||| | || ||| ||||| ||||||||||| Sbjct 235903 AAACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCT 235962 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| || |||| || | |||||| || ||||| ||||| ||||||||||| Sbjct 235963 GCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 236022 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | || ||||| || ||||| ||| | | | | || | |||| || Sbjct 236023 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCA 236082 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| || ||||||||||| || |||||||||||||| Sbjct 236083 ACCTCAAGGGTGATGGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCAT 236132 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || ||| ||||| ||||||||||| | | Sbjct 236818 CCACCACGAAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 236877 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 | |||| | || || | |||||| || || || || |||| ||||| || || || Sbjct 236878 AAGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGG 236937 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 || || |||||||| ||||| ||| | | | | || | || | ||| | Sbjct 236938 ATAC-CT-TCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCA 236995 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || | ||||| ||||| ||||||||||| || ||||||||||||||| Sbjct 236996 CCTCGAGGGTGATAGTTTTCCCGGTGAGAGTCTTAACAAAGATCTGCATC 237045 >seq240 Length=230833 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||||| || | |||| |||| ||| || || ||||| Sbjct 111230 TCTTTCTGGATGTTGTAGTCGGCGAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAG 111171 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || |||||||||||||| | ||| | || |||||||| |||||| ||||| | || Sbjct 111170 ATCAGCCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTTGGATCTTT-GCTTTCACAT 111113 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | |||| || | || || || || | || || || || || || | ||||||| Sbjct 111112 TGTCGATCGTGTCTGATGACTCTACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCA 111053 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 111052 CAAAGATCTGCAT 111040 >seq280 Length=1980472 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| |||||||| ||||||||||||| || | |||| Sbjct 1633022 AGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGTGTTCTCCCGTCT 1632963 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || ||||| || || ||||||||||| | |||| | || |||||||| Sbjct 1632962 TCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTC 1632904 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||||| ||||| | || | | |||| || | || || || || | || || | Sbjct 1632903 TTGGATCTTC-GCTTTCACATTGTCGATCGTGTCTGATGACTCTACCTCTAGGGTTATCG 1632845 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || | |||||||||||||||||||| Sbjct 1632844 TCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 1632811 >seq525 Length=802623 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGT-CGTCC---AACTGCTTGCCTGC 34254 || ||||| |||||||||||| ||| | | |||| ||||| | |||||| || || Sbjct 20333 TCCTTCTGGATGTTGTAGTCG----GCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGC 20388 Query 34255 GAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTA 34313 |||||| | |||||||||| || |||| | | |||||||| ||||| ||| | Sbjct 20389 GAAAATCAATCGCTGCTGGTCCGGCGGG-ATTCCTTCCTTGTCCTGGATCTTGGCCTTCA 20447 Query 34314 GATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTT 34373 || | | || | || | || || || || | ||||| || || || || || |||| Sbjct 20448 CATTGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTT 20507 Query 34374 TCACAAAGATCTGCATC 34390 |||| |||||||||||| Sbjct 20508 TCACGAAGATCTGCATC 20524 >seq454 Length=111167 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || |||| ||| | || ||| ||||| ||||||||||| Sbjct 50110 AAACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCT 50169 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| || |||| || | |||||| || ||||| ||||| ||||||||||| Sbjct 50170 GCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 50229 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | || ||||| || ||||| ||| | | | | || | |||| || Sbjct 50230 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCA 50289 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| || ||||| | || |||||||| |||||||| Sbjct 50290 ACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCAT 50339 >seq270 Length=1109440 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGT-CGTCC---AACTGCTTGCCTGC 34254 || ||||| |||||||||||| ||| | | |||| ||||| | |||||| || || Sbjct 20350 TCCTTCTGGATGTTGTAGTCG----GCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGC 20405 Query 34255 GAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG 34314 |||||| | ||||||||||| || | | |||||||| ||||| ||| | Sbjct 20406 GAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCAC 20465 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || | | || | || | || || || || | ||||| || || || || || ||||| Sbjct 20466 ATTGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTT 20525 Query 34375 CACAAAGATCTGCATC 34390 ||| |||||||||||| Sbjct 20526 CACGAAGATCTGCATC 20541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323039768116160