Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq279 111 1e-19 seq339 95.1 1e-14 >seq279 Length=1218690 Score = 111 bits (122), Expect = 1e-19 Identities = 236/350 (67%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || || || || || || |||||||| | | || | |||||||| || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA----CCAGAAA 16349 || ||||| ||||||||||| |||| ||| || || | || ||| || || | Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGAT----GGAACAGAAGCTTCCGGAGA 625020 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 |||| ||||||||||| || || ||||| | ||| ||| || | || | | | Sbjct 625019 AGAAGATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGAT---C 624963 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 || |||||||| | ||||| | ||||| | ||||| || |||| || | Sbjct 624962 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCG 624903 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 || || | || | | | |||||| | ||| || |||||||| | || | ||||| Sbjct 624902 CACGGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTAT 624843 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578 |||| || || || |||||||| || || ||||| ||||| || |||||| Sbjct 624842 ACATCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA 624793 >seq339 Length=148954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 221/332 (67%), Gaps = 11/332 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| || || || || || || |||||||| | | || || |||||||| || || | Sbjct 22785 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAA 22726 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA----CCAGAAA 16349 || ||||| ||||||||||| |||| ||| || || | || ||| || || | Sbjct 22725 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGAT----GGAACAGAAGCTTCCGGAGA 22670 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 |||| ||||||||||| || || ||||| | ||| ||| || | || | | | Sbjct 22669 AGAAGATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGAT---C 22613 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 || |||||||| | ||||| | ||||| | || || || | || || | Sbjct 22612 CGTCGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATCGTTTCAATCG 22553 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 || || | || || | | |||||| | ||| || |||||||| | || | ||||| Sbjct 22552 CACGGAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGGAGAAGACTAT 22493 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATC 16561 |||| || || || |||||||| || || ||| Sbjct 22492 ACATCTCGGAGTGGATATTCTCAATCGCGATC 22461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462464673459600