Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq180 102 7e-17 seq165 96.9 3e-15 >seq180 Length=4117863 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| ||| || | || | Sbjct 3608378 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAAATCAAGAACAATC 3608319 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || ||| |||| || | | || |||||| || ||| || || ||||| Sbjct 3608318 CTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGAAGTTGATGGCAC 3608259 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 3608258 TTCCTCCATGCCACATGTT-TGCTCAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 3608200 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 3608199 ATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACATTGC 3608150 >seq165 Length=664114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 ||||| ||| |||||| | ||||| | | |||| ||||| ||| || | || | Sbjct 156436 ATTATACTGGCCAAGGATTTGATCAGCTCTTAGATGTAATTAACAAAATCAAGAATAATC 156377 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTT 20407 | | || ||| |||| || | | || ||||| || ||| || || ||||| Sbjct 156376 CTGATGATAGACGAATCATAATGTCAGCTTGGAATCCTCCTGATCTGAAGTTGATGGCAC 156317 Query 20408 TGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 | |||||||| || ||| | ||| || ||||| ||||| ||| ||| | || |||||| Sbjct 156316 TTCCTCCATGCCACATGTT-TGCTCAGTTTTATGTTGCAAATGGAGAACTTTCATGTCAA 156258 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 |||||||| || || || |||||||| || ||||| || || || ||||| Sbjct 156257 ATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACATTGC 156208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399144174659770