Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq191 87.8 4e-12 seq127 86.0 1e-11 >seq191 Length=957377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| ||||| ||||||||||| |||| ||| |||||| | ||| | Sbjct 346015 GATTTTGAATATGATTACTTTGGATTCAAAACGCTTGAGAGATCATATCTCTTAAAAGTA 346074 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||| | || ||| | ||| |||||| ||||| | || |||| || || ||| Sbjct 346075 CAAGGCAAAGTGGTTGAAAGGCCTCAACACATGCTGATGAGGGTTTCTGTTGGCATCCAC 346134 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||||| || || || || || | || ||| |||| | | || ||| | || Sbjct 346135 AAGGAAGATATTGATTCCGCAATCAATACTTACCATTTAATGTCTCAGCGATGGTTCACT 346194 Query 248989 CATGCCACACCGACGCTCTTCAA 249011 ||||| | || || |||||||| Sbjct 346195 CATGCATCTCCTACTCTCTTCAA 346217 >seq127 Length=1358402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||||||||| || ||||| || |||| ||| || ||| | ||| | Sbjct 1060489 GATTTTGAATATGATTTCTTTGGATTTAAAACTCTTGAGAGATCATACCTCTTAAAAGTC 1060430 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || || | || ||| | ||| |||||| ||||| | || ||||| || |||||| Sbjct 1060429 CAAGGAAAAGTTGTTGAAAGGCCTCAACACATGCTGATGAGGGTAGCTGTGGGCATTCAC 1060370 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || || || || | || ||| ||| | | | ||| | || Sbjct 1060369 AAGGATGATATTGATTCCGCAATCCAAACTTACCATTTGATGTCTCAGAGATGGTTTACT 1060310 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || ||||||||||| || || Sbjct 1060309 CATGCATCTCCTACTCTCTTCAACGCTGGAAC 1060278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073653780024448