Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq279 123 2e-23 >seq279 Length=1218690 Score = 123 bits (136), Expect = 2e-23 Identities = 237/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 |||||| || || || || | ||| || |||| | || ||||||||||| || ||||| Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||| | ||||||||| || | ||| || || | | ||| |||||| ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG- 14381 || || ||||| ||| || || | | |||||| | ||| | | | | || Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTC----AGCGAAGGTCTGAGATCCGT 624960 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 |||||||| | ||||| | || ||| || | | || || || ||||| ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 14442 TAAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 || | ||| || |||||| | || ||| ||||| ||||| | ||| | ||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTG--ATGTAAGTATCGAGAAGAAGACTATA 624842 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||| ||||||||||| || || || || ||||| ||||| || ||| Sbjct 624841 CATCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAA 624796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482296243986480