Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq325 102 6e-17 seq267 100 2e-16 seq384 91.5 1e-13 seq134 91.5 1e-13 seq411 87.8 1e-12 seq454 86.0 5e-12 seq233 86.0 5e-12 seq190 84.2 2e-11 >seq325 Length=1091643 Score = 102 bits (112), Expect = 6e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATG-TTGTAGTCGGCCATTGTTTTACA 18169 ||||| |||| |||||||||||| || || |||| ||||| || || | ||| || Sbjct 552054 CTAAGAACCAAGTGAAGTGTTGACTCCTTCTGAACCCTTGTAATCAGCAAGGGTTCGACC 551995 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||| || | ||| ||||||||||||||||||||||| || ||| | | |||||||| Sbjct 551994 ATCCTCGAGTTGCTTGCCCGCATAGATAAGTCTTTGCTGGTCCGGTAGGATTCCTTCCTT 551935 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || || | |||||| | ||| |||||| | ||| ||| | | || Sbjct 551934 GTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAGAATAAT 551875 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||| | ||||| ||||| |||||||| Sbjct 551874 GGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 551839 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || ||||| || |||||||| ||||| || |||| || || | Sbjct 551825 CTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAATCCGCCAAAGTACGACCA 551766 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | ||| || || ||| |||||||||| || || ||| | | ||||||||| Sbjct 551765 TCTTCAAGTTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCCGGAGTAATACCTTCCTTA 551706 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || || | |||||| | ||| |||||| | || |||| || ||| Sbjct 551705 TCTTGGATCTTCGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACCTCAAGAGTTATG 551646 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||| | || || ||||| || ||||| Sbjct 551645 GTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 551611 >seq267 Length=1500311 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | |||||| ||||||||||| || || ||||| || || Sbjct 617503 TCCACCGCGGAGACGAAGAACAAGGTGAAGAGTTGATTCTTTCTGGATATTGTAATCTGC 617562 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||| | |||||| || ||| |||||||||| ||||| ||| | Sbjct 617563 TAAAGTGCGACCATCTTCGAGTTGTTTTCCGGCAAAGATAAGTCTCTGTTGGTCCGGTGT 617622 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | ||| || | ||| || ||| | |||| Sbjct 617623 GATCCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTATCAATCGTATCAGAGCTCTCGAC 617682 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| ||||| || || |||||||| ||||| Sbjct 617683 CTCTAGAGTGATGGTTTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 617730 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 ||||| |||| ||| || ||||| || || ||||| |||||||| |||| ||| | | Sbjct 618428 CTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAGTCAGCCAATGTACGGCCA 618487 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | |||||| || || |||||||||| || || ||| | | |||||||||| Sbjct 618488 TCTTCAAGTTGTTTACCAGCGAAGATAAGTCTCTGCTGGTCCGGAGTGATGCCTTCCTTA 618547 Query 18231 TC 18232 || Sbjct 618548 TC 618549 >seq384 Length=798633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | |||||| ||||||||||| || |||||||| || | | ||| | Sbjct 646537 AGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAAAGCGTTCGA 646478 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | |||||||| || |||| ||||| ||||||||| || | |||||| Sbjct 646477 CCATCCTCAAGCTGTTTGCCAGCGAAGATTAGTCTCTGTTGATCCGGAGGGATTCCTTCC 646418 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || || | | |||| | | || ||| ||||| |||| ||| | ||| Sbjct 646417 TTGTCTTGGATCT-TAGCTTTAACATTGTCAATTGTGTCTGAACTCTCGACTTCTAGGGT 646359 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| ||||| | || || || || || ||||| Sbjct 646358 AATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 646320 >seq134 Length=106205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||||||||||||||| || || | ||| || ||| || || || Sbjct 48941 TGGAGAGTAGACTCTTTTTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCTAACTGC 49000 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| ||||||| || || |||||| || | |||||||| || ||| | | Sbjct 49001 TTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCT-T 49059 Query 18243 TGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| | | || ||| ||| ||| | ||| || | || ||| ||||||| || Sbjct 49060 AGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTTTTGCCAGT 49119 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||| || ||||| || ||||| Sbjct 49120 CAATGTCTTCACAAAGATCTGCAT 49143 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| ||| || |||||||| |||||||||||||| || ||| Sbjct 48005 CCACCACGAAGACGAAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAATCAGCC 48064 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || || || | ||||| || ||| |||||||||| || || || || Sbjct 48065 AAAGTCCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 48124 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || || || ||| | |||||| | ||| ||||| | ||| Sbjct 48125 ATCCCCTCTTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACA 48184 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| || | || || ||||||||||| ||||| |||||||| Sbjct 48185 TCCAAGGTAATAGTCTTCCCTGTCAATGTTTTCACAAAGATTTGCAT 48231 >seq411 Length=621170 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| |||||||| ||||| || ||||| || || | || || ||| || | || Sbjct 569419 GTGAAGGGTTGATTCCTTTTGGATATTGTAATCCGCTAGCGTGCGACCATCCTCGAGCTG 569360 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| |||| ||||| ||||| || || | |||||||| || ||| | Sbjct 569359 TTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCT- 569301 Query 18242 TTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||| ||| | ||| ||||| | ||| ||| | |||||| | ||||| | Sbjct 569300 TAGCTTTGACGTTATCAATTGTGTCTGAGCTCTCAACTTCCAAGGTGATAGTCTTGCCAG 569241 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || |||||||||||||| Sbjct 569240 TCAAAGTCTTCACAAAAATTTGCAT 569216 >seq454 Length=111167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || ||||| || |||||||||||||| |||| ||| || || Sbjct 50128 AGGACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCC 50187 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || || |||| || | || || ||| || | |||||||||||| Sbjct 50188 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCC 50247 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||| | ||| |||| ||||||| | Sbjct 50248 TGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTC 50307 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || |||||||| ||||| Sbjct 50308 TTCCCGGTCAACGTCTTCACAAAAATCTGCAT 50339 >seq233 Length=166549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| ||| || |||||||| || || || ||||| || |||| || | | Sbjct 103534 CTGAGAACCAAGTGGAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCA 103475 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | ||||| || ||| |||| | |||||| |||||| || | |||||||| Sbjct 103474 TCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGGATCCCTTCCTTG 103415 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | ||| || | | | ||||||| | ||| |||| || ||| Sbjct 103414 TCCTGAATCTTTGCCTTAACATTGTCGATAGTGTCAGAGCTCTCTACCTCAAGAGTAATG 103355 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | |||||| || ||||||||||| Sbjct 103354 GTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 103320 >seq190 Length=891836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | ||||| |||||| | |||||| ||||||||||| || |||||||| || | Sbjct 382178 CCACCTCTTAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 382119 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || || || | ||||| || || |||| ||||| ||||||||| || Sbjct 382118 AGCGTTCGACCTTCCTCAAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 382059 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || || | | |||| | | || ||| ||||| |||| Sbjct 382058 ATTCCTTCCTTGTCTTGGATCT-TAGCTTTAACATTGTCAATTGTGTCTGAACTCTCGAC 382000 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| |||| ||||| | || || || || || ||||| Sbjct 381999 TTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 381952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379306154034570