Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq280 91.5 1e-13 seq240 91.5 1e-13 >seq280 Length=1980472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||||||||| || || ||||||||| | || || || || Sbjct 1632811 ATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCATCA 1632870 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || || | || ||||| | ||| |||||| Sbjct 1632871 GACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGACCAG 1632930 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | || || ||||| |||||||| | || | ||| |||| | Sbjct 1632931 CAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTACAAC 1632990 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| | || |||||||| ||| | || || | |||||| Sbjct 1632991 ATCCAGAAAGAGTCGACTCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 1633038 >seq240 Length=230833 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||||||||| || || ||||||||| | || || || || Sbjct 111040 ATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTAGAGTCATCA 111099 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | ||| || | || ||||| | || |||||| Sbjct 111100 GACACGATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCACCGGACCAG 111159 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || || | || | || || ||||| |||||||| | || | ||| |||| | Sbjct 111160 CAGCGGCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTACAAC 111219 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| | ||||||||||| ||| | || || | |||||| Sbjct 111220 ATCCAGAAAGAGTCGACGCTTCATTTGGTGCTCCGTCTGAGAGGAGGT 111267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418262267117120