Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq165 143 5e-29 seq180 136 8e-27 >seq165 Length=664114 Score = 143 bits (158), Expect = 5e-29 Identities = 153/199 (77%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| ||||||||| | || || ||| | || ||||||||| ||||| | Sbjct 156385 AGAATAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAATCCTCCTGATCTGAAGT 156326 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| |||||||| || ||||||||| | | Sbjct 156325 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTGCAAATGGAGAACTTT 156266 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 156265 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGTGTACCATTTAACATTGC 156208 Query 35695 ATCATACTCTCTTCTGACT 35713 |||||||||||||| ||| Sbjct 156207 CTCATACTCTCTTCTTACT 156189 >seq180 Length=4117863 Score = 136 bits (150), Expect = 8e-27 Identities = 151/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| ||||||||| | || || ||| | || ||||| ||| ||||| | Sbjct 3608327 AGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGAAGT 3608268 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| |||||||| || ||||||||| | | Sbjct 3608267 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTATGTTGCAAATGGAGAACTTT 3608208 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 3608207 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGTGTACCATTTAACATTGC 3608150 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||||||||| || Sbjct 3608149 CTCATACTCTCTTCTTAC 3608132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989480209337630