Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq279 179 5e-40 seq477 105 8e-18 seq140 95.1 2e-14 seq191 87.8 2e-12 >seq279 Length=1218690 Score = 179 bits (198), Expect = 5e-40 Identities = 407/605 (67%), Gaps = 13/605 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||| |||||||| | || ||||||| | || | |||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || || || |||||||| || |||||| ||| |||||| ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT 33758 ||| ||||| || ||| || |||| | || || | | | ||| || || Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAA----GGTCTGAGATCCGT 624960 Query 33759 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| || ||||| | || ||||| |||||||| ||||| || || ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 ||||||| || | | || || | ||||| | |||||||||| | ||||||||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACA 624840 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 | || || || || || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 624839 TCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 624780 Query 33937 TCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 || || || | ||| || || ||| | ||| || || || || || ||| Sbjct 624779 CTTGGACATC-GGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCA 624721 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT-TTATTC 34052 || || || || | || ||||| || || | |||| | | || | | || | | Sbjct 624720 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 624661 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 ||||| | | |||| |||| ||| |||||||| | ||||| || ||||| || || Sbjct 624660 CAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 624601 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 || || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 624600 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 624541 Query 34173 TTTGG 34177 |||| Sbjct 624540 GTTGG 624536 >seq477 Length=1203188 Score = 105 bits (116), Expect = 8e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 20440 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 20381 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| || || || || || || | |||| |||||||||| || || ||| Sbjct 20380 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGA 20321 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || |||||||| ||| || | || || ||| |||||||||||||| Sbjct 20320 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGAT 20261 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | ||||| |||||| Sbjct 20260 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 20218 >seq140 Length=1024829 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| ||| | ||||| || || || || | |||| | |||||||||||| || ||| Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||||| ||||||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 >seq191 Length=957377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 346558 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 346499 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| || || || || || || | |||| | ||||| || || || ||| Sbjct 346498 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 346439 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || |||||||| ||| || | || || ||| ||||||||||| || Sbjct 346438 TACACCGATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 346379 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| | ||||| |||||| Sbjct 346378 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 346336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629753153914080