Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq4050 201 4e-47 seq4875 82.4 3e-11 >seq4050 Length=1194 Score = 201 bits (222), Expect = 4e-47 Identities = 193/242 (80%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 44066 GATCATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGT 44124 || ||| || ||||| ||| | |||||| || ||||||| || |||||| ||||||| Sbjct 496 GAGCATCCCCAGCGCCTGC-ATGTAGGTTTCCAGGATGGTTTCCTGCTCCTGACGCTCGT 554 Query 44125 CGGTGTCCTGCTTGCGCA-GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTC 44183 ||| |||||||||||||| |||| || | | ||||| | |||| | || |||||| | Sbjct 555 CGGCGTCCTGCTTGCGCATGCGA-ATGATGGTGCGCAGCACCTTGACGTCAAAGCCGTTG 613 Query 44184 CCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCC 44243 ||||| ||||||||||| | ||||||||||||||| |||||| |||||||||||||| Sbjct 614 CCCTTGGCCTCGCCGTAGCCGTCCTTGATGTCGTCGCTGATGGTTTTCTTTTCTTCCTCG 673 Query 44244 AAGCGTTCGATGCGGTGGATGAAGGCCTTGAGCTGATCGCGCGCAACGCTGTGCACGCTT 44303 | ||||||||||| | ||||| ||||||||||||| | ||||| ||||||| || || Sbjct 674 AGCCGTTCGATGCGCTCGATGATGGCCTTGAGCTGACCTTTCGCAAAGCTGTGCGCGGTT 733 Query 44304 TC 44305 || Sbjct 734 TC 735 >seq4875 Length=1066 Score = 82.4 bits (90), Expect = 3e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 44172 TCGAAGCCGGTCCCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTC 44231 ||||| ||| | ||||| || ||||| || ||||||||||| |||||| |||||| ||| Sbjct 379 TCGAATCCGTTGCCCTTGGCTTCGCCATAGACATCCTTGATATCGTCGCTGATGGTTTTC 438 Query 44232 TTTTCTTCCTCCAAGCGTTCGATGCGGTGGATGAAGGCCTTGAGCTGATC 44281 || ||||| |||| || || | ||| | ||| | || || ||||| || Sbjct 439 TTGTCTTCTTCCAGCCGCTCCACGCGCTCGATAATGGATTTAAGCTGGTC 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183591751540296