Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq127 100 3e-16 seq140 87.8 2e-12 >seq127 Length=1358402 Score = 100 bits (110), Expect = 3e-16 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| | |||||| | | Sbjct 1060265 TTGAGGCCTTGGAGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTG 1060324 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| | ||| |||||| | |||||| || | || Sbjct 1060325 AGACATCAAATGGTAAGTTTGGATTGCGGAATCAATATCATCCTTGTGAATGCCCACAGC 1060384 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577 ||||||||| ||||| ||||| || ||||| | | ||| || || |||||| || Sbjct 1060385 TACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGACT-TTTAAG-AGG 1060442 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| | || | ||||| | |||||| || |||| | |||| | ||| || Sbjct 1060443 TATGATCTCTCAAGAGTTTTAAATCCAAAGAAATCATATTCAAAATCACGATCATA 1060498 >seq140 Length=1024829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||| ||||| ||||| || | |||||||||||||| | |||||| | | Sbjct 727598 TTGAGGCCTTGGTGTTCCAGCGTTGAAAAGAGTAGGAGATGCATGAGTAAACCATCTCTG 727657 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||||||| ||| | || |||||| | |||||| || | || Sbjct 727658 AGACATCAAATGGTATGTTTGGATTGCGGAGTCAATATCATCCTTGTGAATGCCAACAGC 727717 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 ||||||||| ||||| ||||| || || || | | ||| || || |||||| || Sbjct 727718 TACCCTCATCAGCATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACT-TTTAAG-AGG 727775 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| | || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 727776 TATGATCTCTCAAGAGTTTTAAATCCGAAGAAATCATATTCAAAATCACGATCATA 727831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468476858199840