Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq180 84.2 2e-11 >seq180 Length=4117863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || || | ||| ||| |||||||| || || ||||| Sbjct 3608113 GACGTGAGCGAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 3608172 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || || || || || || || ||||| Sbjct 3608173 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 3608232 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| | || || | |||||||| || Sbjct 3608233 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGTTCCAAGC 3608292 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | ||| || | ||| Sbjct 3608293 TGACATTATGATTCGTCTATC 3608313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427733322125280