Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq279 176 6e-39 seq477 118 2e-21 seq191 100 4e-16 seq127 98.7 1e-15 seq140 95.1 2e-14 >seq279 Length=1218690 Score = 176 bits (194), Expect = 6e-39 Identities = 406/604 (67%), Gaps = 11/604 (2%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| |||||||| | || ||||||| | || |||||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || || || |||||||| || ||||| || || || ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCTGTCATG 50135 ||| ||||| || || || ||||| | || || | | ||| | | ||| Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAAGGTCTGAGATCCGTCG-- 624958 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| || ||||| | || ||||| |||||||| ||||| || || ||| Sbjct 624957 -ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCACG 624899 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||||| || | | || || | ||||| | |||||||||| | |||||||||||| Sbjct 624898 GAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 624839 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || || || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 624838 CTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 624779 Query 50316 CTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 || || || | ||| || || || | ||| || || || ||||| ||| | Sbjct 624778 TTGGACATC-GGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCAG 624720 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG--TTGGGTGTTAGT-TTATTCC 50431 | || || || | || ||||| || || || |||| | | || | | || | || Sbjct 624719 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCC 624660 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 |||| | | |||| |||| |||||||||||| | ||||| || ||||| || || | Sbjct 624659 AATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTT 624600 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 | || ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 624599 TCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGGG 624540 Query 50552 TTGG 50555 |||| Sbjct 624539 TTGG 624536 >seq477 Length=1203188 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 20440 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 20381 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| || || || || || || |||||| |||||||||| || || ||| Sbjct 20380 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGA 20321 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || |||||||| ||| || | || || ||| ||||| |||||||| Sbjct 20320 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGAT 20261 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 20260 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 20218 >seq191 Length=957377 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 346558 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 346499 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| || || || || || || |||||| | ||||| || || || ||| Sbjct 346498 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 346439 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| || |||||||| ||| || | || || ||| ||||| ||||| || Sbjct 346438 TACACCGATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 346379 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 346378 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 346336 >seq127 Length=1358402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 1059919 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 1059978 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || ||||| | ||||| |||||| | ||| Sbjct 1059979 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTTGCACGGATATTATGAGCTGA 1060038 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || ||||| |||| || | || || ||| | || ||||| || Sbjct 1060039 AACACCAATACCACCTGCAGATTTACTTATAACAGCACACTCTTTGAGTGTTTCATATAT 1060098 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||||| ||||||||||| ||||| | | ||||||||| Sbjct 1060099 GCCCTCAATGCTATCATCTTTCATGCACACCAAAAAACAGCT 1060140 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||||||||| || || || | ||||| ||||||||||| ||||||||||| | | | || Sbjct 1058634 GAGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTT 1058693 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| || ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 1058694 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 1058750 >seq140 Length=1024829 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || ||||| ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||||||||| || || || | ||||| ||||||||||| ||||||||||| | | | || Sbjct 725958 GAGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTT 726017 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| || ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 726018 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 726074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718195303145040