Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq279 111 2e-19 >seq279 Length=1218690 Score = 111 bits (122), Expect = 2e-19 Identities = 237/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| || || || || | ||| || |||| | || ||||||||||| || ||||| Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||| | ||||||||| || | ||| || || | | || ||||| ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG- 14049 || || ||||| ||| || || | | |||||| | ||| | | | | || Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTC----AGCGAAGGTCTGAGATCCGT 624960 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 |||||||| | ||||| | || ||| || | | || || || ||||| ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 14110 TAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || | || || |||||| | || ||| ||||| ||||| | ||| | ||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTG--ATGTAAGTATCGAGAAGAAGACTATA 624842 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215 ||| ||||||||||| || || || || ||||| ||||| || |||||| Sbjct 624841 CATCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA 624793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479678911832400