Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq279 118 1e-21 >seq279 Length=1218690 Score = 118 bits (130), Expect = 1e-21 Identities = 236/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 |||||| || || || || | ||| || |||| | || ||||||||||| || ||||| Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| | ||||||||| || | ||| || || | | ||| |||||| ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG- 13837 || || ||||| ||| || || | | |||||| | ||| | | | | | Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTC----AGCGAAGGTCTGAGATCCGT 624960 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 |||||||| | ||||| | || ||| || | | || || || || || ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 13898 TGAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||| | ||| || |||||| | || ||| ||||| ||||| | ||| | ||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTG--ATGTAAGTATCGAGAAGAAGACTATA 624842 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||| ||||||||||| || || || || ||||| ||||| || ||| Sbjct 624841 CATCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAA 624796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478539828401040