Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq280 95.1 9e-15 seq233 87.8 1e-12 seq82 86.0 5e-12 seq240 84.2 2e-11 seq60 82.4 6e-11 >seq280 Length=1980472 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | ||| ||| || || | ||||| |||| Sbjct 1633037 CCTCCTCTCAGACGGAGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCG 1632978 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| |||| ||||| ||||| || |||| ||||| || || | ||| Sbjct 1632977 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 1632918 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | |||| || || | | ||||| | ||| || Sbjct 1632917 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 1632858 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| ||||| || || || |||| ||||||||||| || |||||||| Sbjct 1632857 TCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 1632808 >seq233 Length=166549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| ||||| || | ||||||||| | ||| |||||| | || || Sbjct 103528 ACCAAGTGGAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCATCCTCA 103469 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| |||||||| ||||||| || ||||| | || | ||||| || || ||| Sbjct 103468 AGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGGATCCCTTCCTTGTC-CTG 103410 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 | || | || || || | | ||||| ||| ||| || || | || || || | Sbjct 103409 AATCTTTGCCTTAACATTGTCGATAGTGTCAG-AGCTCTCTACCTCAAGAGTAATGGTCT 103351 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || |||||||| ||||||||||| Sbjct 103350 TGCCAGTAAGTGTTTTCACGAAAATTTGCAT 103320 >seq82 Length=470516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| ||| || || | |||||||||| ||| || || | || || Sbjct 87663 CACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTC 87722 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || |||||||| || | | ||| ||||| | || | || ||||| || Sbjct 87723 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCCTCTTTATCTTG 87782 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| || ||| || || ||| ||| || |||| || || |||| Sbjct 87783 GATCTTAGCTTTGACATTGTCAATGGTATC-TGAGCTCTCAACCTCTAGGGTGATTGTTT 87841 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || ||||| |||||||| || ||||| Sbjct 87842 TACCCGTGAGAGTCTTCACAAAGATCTGCAT 87872 >seq240 Length=230833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | || ||| || || | ||||| |||| Sbjct 111266 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 111207 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | |||| |||| ||||| ||||| || |||| ||||| || || | || Sbjct 111206 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGG 111147 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || || | | ||||| | ||| || Sbjct 111146 ATCCCTTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 111087 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTA 43116 |||| ||||| || || || |||| ||||||||||| || |||||||| ||| Sbjct 111086 TCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTTTTTA 111033 >seq60 Length=318476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| ||| || || | |||||| || | | ||| || | || || Sbjct 55867 CACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGCTAGTGTGCGACCATCCTC 55926 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 |||||||| |||||||| || | || ||| ||||| | || | || ||||| || Sbjct 55927 TAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTTATCCTG 55986 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | || || || ||| ||||| | ||| || || | || || ||||| Sbjct 55987 GATCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCAACCTCGAGGGTGATGGTTTT 56046 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || |||||||| || ||||| Sbjct 56047 GCCAGTCAACGTCTTCACAAAGATCTGCAT 56076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381331551946788