Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq82 113 5e-20 seq61 107 2e-18 seq411 104 2e-17 seq60 104 2e-17 seq75 91.5 1e-13 seq325 89.7 5e-13 seq134 87.8 2e-12 seq281 86.0 6e-12 seq267 86.0 6e-12 >seq82 Length=470516 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||| ||||| | || || ||||| || |||||||||||| | Sbjct 88102 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 88161 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || |||||||| || |||||| | |||||| || ||||| Sbjct 88162 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 88221 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 88222 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACC 88281 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 88282 TCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 88328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| || ||||| ||||||||||| Sbjct 87418 CCACCACGGAGACGAAGCACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAATCAGCG 87477 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||| ||||| |||||| |||| || | ||||| || || || Sbjct 87478 AGGGTGCGTCCGTCTTCGAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 87537 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||| || | | || | ||||| | | || || Sbjct 87538 ATCCCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACC 87597 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||||||||| | || || || || || |||||| Sbjct 87598 TCCAAAGTGATAGTCTTGCCGGTTAGGGTCTTCACAAAAATCTGCATA 87645 >seq61 Length=1440766 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | ||| ||||| | || || ||||| || |||||||||||| | Sbjct 1073654 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 1073595 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || |||||||| || |||||| | |||||| || ||||| Sbjct 1073594 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 1073535 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| |||| || ||| || | | || | ||||| | | || || Sbjct 1073534 ATGCCTTCCCTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACC 1073475 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 1073474 TCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 1073428 >seq411 Length=621170 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| || | ||| || |||| || |||||||| || ||||||||||| | Sbjct 568530 CCACCTCTTAACCGGAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAATCTGCC 568471 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||||||||| |||||| | |||||||| ||||| Sbjct 568470 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 568411 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 568410 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACC 568351 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 568350 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 568304 >seq60 Length=318476 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| ||||||| || || ||||| || ||||||||||| | Sbjct 56078 CCACCTCTTAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 56137 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||||||||| |||||| | ||||||||| ||||| Sbjct 56138 AAGGTACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 56197 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 56198 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATTGTGTCAGAGCTCTCAACC 56257 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | |||||| ||||| |||||||| Sbjct 56258 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 56304 >seq75 Length=1220249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| ||||| ||||| || ||||||||||| || || | || Sbjct 48659 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAGGTTCGGCCATC 48600 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||| ||||||||| ||||||| | ||| ||||| || ||||| || |||||||| Sbjct 48599 TTCGAGTTGCTTACCAGCAAAGATCAGCCTTTGTTGATCAGGTGGTATACCCTCTTTGTC 48540 >seq325 Length=1091643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| ||||| | || || ||||| || ||||||||||| | Sbjct 552295 GCCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCTTTCTGGATGTTGTAATC-CG 552237 Query 143017 CATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || ||| ||| || |||||||| || || ||| |||| || | ||||| || ||| Sbjct 552236 CA-AGTGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGA 552178 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 | |||||||| ||||| || || || | | || | |||||| | | ||| Sbjct 552177 GTGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATCGTGTCAGAGCTTTCA 552118 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| ||| | |||||||| || | || || || || |||||||| Sbjct 552117 ACTTCAAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 552068 >seq134 Length=106205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| ||||| ||||||||||| | Sbjct 48005 CCACCACGAAGACGAAGAACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAATCAGCC 48064 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| ||||| ||||| |||||| |||| || | ||||| || || || Sbjct 48065 AAAGTCCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 48124 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | | || || Sbjct 48125 ATCCCCTCTTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACA 48184 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||||||||| || || ||||||||| Sbjct 48185 TCCAAGGTAATAGTCTTCCCTGTCAATGTTTTCACAAAGATTTGCATA 48232 >seq281 Length=1304507 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| ||||| ||||| || ||||||||||| || || | || Sbjct 310097 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAGGTTCGGCCATC 310038 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||| ||||||||| |||| || | ||| ||||| || ||||| || |||||||| Sbjct 310037 TTCGAGTTGCTTACCAGCAAAGATGAGCCTTTGTTGATCAGGTGGTATACCCTCTTTGTC 309978 >seq267 Length=1500311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| || || | ||| || ||||| || ||||||||||| | Sbjct 617959 GCCACCACGAAGACGAAGAACCAAGTGTAGTGTTGACTCTTTCTGGATGTTGTAATC-CG 618017 Query 143017 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || ||| ||| ||||||||||| || || ||| |||| || | ||||| || ||| Sbjct 618018 CAA-GTGTCCGACCATCTTCGAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGA 618076 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| || || || | | || | ||||| | | || Sbjct 618077 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCTATTGTGTCTGAGCTCTCC 618136 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | || ||||| || | ||||| || ||||||||||| Sbjct 618137 ACTTCTAGAGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 618186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506962519751520