Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq279 100 4e-16 seq180 95.1 2e-14 seq165 95.1 2e-14 seq339 84.2 3e-11 >seq279 Length=1218690 Score = 100 bits (110), Expect = 4e-16 Identities = 365/560 (65%), Gaps = 15/560 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || | || ||||| ||||| | |||||| || ||||| Sbjct 624581 ATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTAGATCTA 624640 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||||||||||| || | | || || || | || || Sbjct 624641 TCACAAGACAACCGCGATTGGGAGAACAGTCTCAACGACGGCGAACGTCACTTCATCAAA 624700 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| || | |||||| || ||||| || ||||| | || Sbjct 624701 CACGTCCTCGCTTTCTTCGCTGCCTCCGACGGTATCGTTCTAGAGAATCTCGCATCTCGG 624760 Query 125199 TTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCAT 125254 ||| | || | || ||| || | |||| | |||||||| ||||| ||||| ||| Sbjct 624761 TTCATGTCC---GATGTCCAAGTCTCGGAGGCG-CGTGCTTTCTACGGTTTCCAGATCGC 624816 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||||||||| | ||||| || ||||| | || | || | ||||| || | Sbjct 624817 GATTGAGAATATACACTCTGAGATGTATAGTCTTCTTCTCGATACTTACATCAAAGA-CA 624875 Query 125315 GCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||| | | | || ||||| || || || ||| | || | | | || || | Sbjct 624876 ACAAAGAGAGAGACCATCTCTTCCGTGCGATTGAGACGATTCCTTGTGTCGCGAAGAAAG 624935 Query 125374 CTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 |||| |||| ||| |||||||| | | || ||||| | || || | || Sbjct 624936 CTCAGTGGGCGATGAAATGGATCGACGGATCTCAGACCTTCG----CTGAACGAATCGTT 624991 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||| ||| || || |||||||| || || || || ||||||| ||||| Sbjct 624992 GCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGTTCCATCTTCTGGCTT 625051 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || ||||||||||| || | || | ||||| | || ||||||||||| Sbjct 625052 AAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAACTGATCTCTCGAGACGAA 625111 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| ||||||| ||||| || Sbjct 625112 GGCTTACACTGCGACTTCGC 625131 >seq180 Length=4117863 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||||| | ||| |||||| | ||||| ||| | ||| || Sbjct 3608330 TCAAGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAACCCTCCTGATCTGA 3608271 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | |||||||| || || || ||| |||||| |||||||||| | | | |||| | Sbjct 3608270 AGTTGATGGCACTTCCTCCATGCCACATGTTTG-CTCAGTTTTATGTTGCAA-ATGGAGA 3608213 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 3608212 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACAT 3608153 Query 70363 TGC 70365 ||| Sbjct 3608152 TGC 3608150 >seq165 Length=664114 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| ||||| ||||| | ||| |||||| | ||||||||| | ||| || Sbjct 156388 TCAAGAATAATCCTGATGATAGACGAATCATAATGTCAGCTTGGAATCCTCCTGATCTGA 156329 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | |||||||| || || || ||| |||||| |||||||||| | | | |||| | Sbjct 156328 AGTTGATGGCACTTCCTCCATGCCACATGTTTG-CTCAGTTTTATGTTGCAA-ATGGAGA 156271 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||| ||||| ||||||||||| |||||||| Sbjct 156270 ACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACAT 156211 Query 70363 TGC 70365 ||| Sbjct 156210 TGC 156208 >seq339 Length=148954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 ||| || || | || || ||||| || || || |||||||| || || || || Sbjct 22626 CGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTG 22685 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 ||||||| ||||| ||||| || ||||||||||| || | || | ||||| || Sbjct 22686 TTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATT 22745 Query 125537 TATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || ||||||||||| ||| ||||||| ||||| || Sbjct 22746 GATCTCTCGAGACGAAGGCTTACACTGCGACTTCGC 22781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740983371117360