Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq82 107 1e-18 seq61 102 6e-17 seq384 95.1 9e-15 seq411 93.3 3e-14 seq177 93.3 3e-14 seq60 93.3 3e-14 seq267 86.0 5e-12 seq190 86.0 5e-12 seq6139 84.2 2e-11 seq325 84.2 2e-11 seq99 84.2 2e-11 >seq82 Length=470516 Score = 107 bits (118), Expect = 1e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 88102 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 88161 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||||| || ||| | ||||| | ||| ||||| ||| Sbjct 88162 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 88221 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || ||||| || | || || Sbjct 88222 ATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCGAC 88280 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 || | || ||||| ||||| || || ||||| || ||||||||||| | |||| Sbjct 88281 CTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCATCTGGGAAA 88336 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || ||||| |||||||| ||||| || |||||||||||| Sbjct 87646 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 87705 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | || |||| || || || || | || | | || || || |||| Sbjct 87706 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 87765 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || || || ||| || ||| | || |||||||| | || || Sbjct 87766 ATTCCCTCTTTATCTTGGATCTTAGCT-TTGACATTGTCAATGGTATCTGAGCTCTCAAC 87824 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||| || |||||||| || ||||| || ||||| || |||||| Sbjct 87825 CTCTAGGGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATCTGCATA 87873 >seq61 Length=1440766 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 1073654 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 1073595 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | ||||| || ||| | ||||| | ||| ||||| ||| Sbjct 1073594 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 1073535 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| |||| || ||||| ||| ||| | || ||||| || | || || Sbjct 1073534 ATGCCTTCCCTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCGAC 1073476 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 1073475 CTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 1073428 >seq384 Length=798633 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| || | || | |||||||| || ||||| || ||||||||||| Sbjct 646546 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 646487 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | |||||||||||| | || | | ||||| || || Sbjct 646486 AGCGTTCGACCATCCTCAAGCTGTTTGCCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 646427 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || || | | || || Sbjct 646426 ATTCCTTCCTTGTCTTGGATCTTAGCT-TTAACATTGTCAATTGTGTCTGAACTCTCGAC 646368 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||||||||||||| || || || || || || || |||||| Sbjct 646367 TTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 646319 >seq411 Length=621170 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| || | | ||| || |||||||| || ||||| || ||||||||||| || Sbjct 568530 CCACCTCTTAACCGGAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAATCTGCC 568471 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| ||||| |||||| | ||||| | || || || || Sbjct 568470 AAGG-TACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGG 568412 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| || || ||| ||| | || ||||| || | || || Sbjct 568411 AATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 568352 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || ||||||||||| Sbjct 568351 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 568304 >seq177 Length=445524 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||||||| || |||| |||| || Sbjct 392218 AACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 392159 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | || ||||| || || || || ||||| Sbjct 392158 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 392099 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || ||||| || | | || || || ||||| || || || Sbjct 392098 GATCTTGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATAGTCTT 392039 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| |||||| Sbjct 392038 TCCGGTTAGGGTTTTGACGAAAATCTGCATA 392008 >seq60 Length=318476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| | | | ||| ||||||||||| || ||||| || ||||||||||| || Sbjct 56078 CCACCTCTTAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 56137 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| ||||| |||||| | ||||| | ||| || || || Sbjct 56138 AAGG-TACGACCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGG 56196 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| || || ||| ||| | || || || || | || || Sbjct 56197 AATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATTGTGTCAGAGCTCTCAAC 56256 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| || ||||||||||| Sbjct 56257 CTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 56304 >seq267 Length=1500311 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || ||||| || ||||||||||| || | | | ||||| Sbjct 617977 AACCAAGTGTAGTGTTGACTCTTTCTGGATGTTGTAATCCGCAAGTGTCCGACCATCTTC 618036 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | || | | || ||||| ||||||||||| ||||| Sbjct 618037 GAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCTTG 618096 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | ||||| || || | || || |||| ||||||||||| Sbjct 618097 GATCTTGGCCTTGACATTGTCTATTGTGTCTGAGCTCTCCACTTCTAGAGTAATGGTTTT 618156 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 618157 GCCAGTGAGGGTTTTCACAAATATTTGCAT 618186 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || || |||||||| || | | | | ||||| | |||| Sbjct 617528 TGAAGAGTTGATTCTTTCTGGATATTGTAATCTGCTAAAGTGCGACCATCTTCGAGTTGT 617587 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | | |||||||| || || ||||||||||| ||| ||| Sbjct 617588 TTTCCGGCAAAGATAAGTCTCTGTTGGTCCGGTGTGATCCCTTCTTTGTCTTGAATCTTG 617647 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || ||||| | || || |||| || |||||||| || ||| Sbjct 617648 GCCTTCACGTTATCAATCGTATCAGAGCTCTCGACCTCTAGAGTGATGGTTTTGCCCGTC 617707 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || |||||||| ||||| Sbjct 617708 AAAGTCTTGACAAAAATCTGCAT 617730 >seq190 Length=891836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || | || | |||||||| || ||||| || ||||||||||| Sbjct 382178 CCACCTCTTAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 382119 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | || || | ||||| |||||| | || | | ||||| || || Sbjct 382118 AGCGTTCGACCTTCCTCAAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 382059 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || || | | || || Sbjct 382058 ATTCCTTCCTTGTCTTGGATCTTAGCT-TTAACATTGTCAATTGTGTCTGAACTCTCGAC 382000 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| ||||||||||||||| || || || || || || || |||||| Sbjct 381999 TTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCATA 381951 >seq6139 Length=4094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||||||| || |||| |||| || Sbjct 341 AACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 400 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | || ||||| || || || || ||||| Sbjct 401 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 460 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || | || ||||| || | | || || || | ||||| || || Sbjct 461 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGTCTT 520 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| |||||| Sbjct 521 TCCGGTTAGGGTTTTGACGAAAATCTGCATA 551 >seq325 Length=1091643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || ||||| ||||||||||| ||| ||| | || || Sbjct 552504 ACTAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCCGCTAGGGTTCGACCATCCTCG 552445 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | || | | || ||||| | | || ||||| ||||| Sbjct 552444 AGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCTGGTAGGATCCCTTCCTTGTCTTGG 552385 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | ||||| || || |||| || || || || |||||||| Sbjct 552384 ATCTTGGCCTTGACATTGTCTATTGTGTCTGAGCTTTCAACCTCCAATGTTATGGTTTTT 552325 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 552324 CCGGTAAGGGTCTTGACGAATATTTGCAT 552296 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || || ||||||||| || ||| | ||||| | |||| Sbjct 552726 TGAAGAGTCGACTCTTTCTGGATATTGTAATCGGCAAGTGTTCGACCATCTTCGAGTTGT 552667 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | | || ||||| || || ||||||||||| ||| ||| Sbjct 552666 TTCCCGGCAAAGATTAGTCTCTGCTGGTCCGGTGTGATCCCTTCTTTGTCTTGAATCTTG 552607 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || ||||| | || || |||| || |||||||| || ||| Sbjct 552606 GCCTTCACGTTATCAATCGTATCAGAGCTCTCGACTTCTAGAGTGATGGTTTTGCCCGTC 552547 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || |||||||| ||||| Sbjct 552546 AAAGTCTTGACAAAAATCTGCAT 552524 >seq99 Length=1465915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||||||| || |||| |||| || Sbjct 434627 AACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTC 434686 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | || ||||| || || || || ||||| Sbjct 434687 GAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTG 434746 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || | || ||||| || | | || || || | ||||| || || Sbjct 434747 GATCTTGGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCACCTCGAGAGTAATCGTCTT 434806 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| |||||| Sbjct 434807 TCCGGTTAGGGTTTTGACGAAAATCTGCATA 434837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362143066513026