Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6139 98.7 8e-16 seq99 98.7 8e-16 seq325 89.7 4e-13 seq134 89.7 4e-13 seq233 87.8 1e-12 seq267 84.2 2e-11 >seq6139 Length=4094 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || |||| ||| | |||||||||||||| || ||||| || ||| Sbjct 96 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 155 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || ||||||||| ||| || || ||| | || | |||||||| ||| || Sbjct 156 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 215 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || || || | | ||| || || | |||| Sbjct 216 ATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACC 275 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || || || |||||||| |||||||| Sbjct 276 TCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 322 >seq99 Length=1465915 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || |||| ||| | |||||||||||||| || ||||| || ||| Sbjct 434382 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 434441 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || ||||||||| ||| || || ||| | || | |||||||| ||| || Sbjct 434442 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 434501 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || || || | | ||| || || | |||| Sbjct 434502 ATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACC 434561 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || || || |||||||| |||||||| Sbjct 434562 TCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 434608 >seq325 Length=1091643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || ||||||||||||||||||||||||||| Sbjct 551837 CCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAATCCGCC 551778 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || | || || || || ||||| ||| | |||||||||||||| ||| Sbjct 551777 AAAGTACGACCATCTTCAAGTTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCC 551724 >seq134 Length=106205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||||||||| |||||||| |||| || ||||||| Sbjct 48023 ACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAATCAGCCAAAGTCCGACCGTCCTCG 48082 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | |||||||||||||| || || | ||||||||||| | Sbjct 48083 AGCTGTTTCCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGA 48142 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | || || ||| || | |||||| || || Sbjct 48143 ATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACATCCAAGGTAATAGTCTTC 48202 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || ||||| ||||| |||||||| Sbjct 48203 CCTGTCAATGTTTTCACAAAGATTTGCAT 48231 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| |||||||| |||||||| || | ||| | ||||| | ||| ||||| Sbjct 48947 GTAGACTCTTTTTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTCTAACTGCTTACCA 49006 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| |||||||||||| || | || || ||||| ||| || ||| Sbjct 49007 GCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTAGCTTTA 49066 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| ||| || | ||||||||||| || || || || Sbjct 49067 ACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTTTTGCCAGTCAATGTC 49126 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 49127 TTCACAAAGATCTGCAT 49143 >seq233 Length=166549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||||| | |||| ||| | || || ||||| || ||||||||||||||| Sbjct 103546 CCACCTCTTAACCTGAGAACCAAGTGGAGAGTTGATTCCTTCTGGATATTGTAATCCGCC 103487 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||||||||| ||| | || | ||| ||||||||| || Sbjct 103486 AAGGTACGTCCATCCTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGG 103427 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | || || ||||| ||| || || || | | ||| ||| | ||| |||| | Sbjct 103426 ATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATAGT---GTCAGAGCTCTCT 103370 Query 18994 --TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||| || || || | ||||| || ||||||||||| Sbjct 103369 ACCTCAAGAGTAATGGTCTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 103320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || |||||||| || | ||| | ||||| | ||| ||||| Sbjct 103744 GTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCCTCTAACTGCTTACCA 103685 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| |||||||||||| || | || || ||||| ||| || ||| Sbjct 103684 GCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTAGCTTTA 103625 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | |||||| ||| || | ||||||||||| || || || || Sbjct 103624 ACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAAGTAATGGTTTTGCCAGTCAATGTC 103565 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 103564 TTCACAAAGATCTGCAT 103548 >seq267 Length=1500311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || |||||||| ||||||||||| || ||| Sbjct 618416 CCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAGTCAGCC 618475 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| | | || || || |||||||| || | |||||||||||||| ||| Sbjct 618476 AATGTACGGCCATCTTCAAGTTGTTTACCAGCGAAGATAAGTCTCTGCTGGTCC 618529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414531439367284