Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq82 96.9 2e-15 seq240 87.8 1e-12 seq60 86.0 4e-12 seq134 82.4 5e-11 >seq82 Length=470516 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | ||||||||| || ||| |||||| || || || |||||| Sbjct 87645 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 87704 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| || | || || || ||||| || | || ||||| ||| | || Sbjct 87705 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 87764 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || |||||| | ||| ||||||| ||| || Sbjct 87765 AATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAAC 87824 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || | |||||||||||| || ||||| Sbjct 87825 CTCTAGGGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATCTGCAT 87872 >seq240 Length=230833 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| | | ||||||||| ||||| |||||| || || || || ||| Sbjct 111267 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGC 111208 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | | | || |||| ||||| || || || |||| ||| ||||||||| | || Sbjct 111207 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 111148 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| || ||| ||| || | | | || |||| | ||| || Sbjct 111147 GATCCCTTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATCGTGTCTGATGACTCTAC 111088 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || ||||| || |||||||| || ||||| Sbjct 111087 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 111040 >seq60 Length=318476 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || ||| |||||| || ||||| || || Sbjct 55849 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCAGC 55908 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || |||||||| || ||||| || | | ||||| ||| | || Sbjct 55909 TAGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGG 55968 Query 44014 TACACCTTCTTTATC-TGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | || |||||||| || | | || | | | ||| | ||| ||| |||| ||| Sbjct 55969 GATTCCCTCTTTATCCTGGA--TCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCA 56026 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| || || ||||| || || || ||||||||||| || ||||| Sbjct 56027 ACCTCGAGGGTGATGGTTTTGCCAGTCAACGTCTTCACAAAGATCTGCAT 56076 >seq134 Length=106205 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||| | ||| || || |||||||||||| || ||||| Sbjct 48916 ACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCTTTTTGAATGTTGTAATCAGC 48975 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || || || || || ||||| || | || ||||| ||| |||| Sbjct 48976 AAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 49035 Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCC 44071 | ||||| || | ||||| | || | || | ||| | ||| |||||| | ||| Sbjct 49036 AATCCCTTCCTTGTCCTGAA--TCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCA 49093 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 49094 ACCTCCAAAGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 49144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354742204947528