Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq134 89.7 4e-13 seq233 86.0 5e-12 >seq134 Length=106205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || ||||| |||||||| ||||||||||| | | || | ||| || Sbjct 48934 CACAAGATGGAGAGTAGACTCTTTTTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTC 48993 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || || || ||| | ||||||||||| ||||| || | ||||| ||||| Sbjct 48994 TAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 49053 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || ||| || | || |||| |||||||||| Sbjct 49054 AATCTTAGCTTTAACATTGTCAATAGTATC-AGAGCTCTCAACCTCCAAAGTAATGGTTT 49112 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || ||||| || ||||| Sbjct 49113 TGCCAGTCAATGTCTTCACAAAGATCTGCAT 49143 >seq233 Length=166549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||| || ||||| || ||||| ||||||||||| | | || | ||| || Sbjct 103757 CACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCCTC 103698 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || || || ||| | ||||||||||| ||||| || | ||||| ||||| Sbjct 103697 TAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 103638 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTT 20177 ||| || ||| || | | ||| || ||| || | || |||| |||||||||| Sbjct 103637 AATCTTAGCTTTAACATTGTCAATAGTATC-AGAGCTCTCAACCTCCAAAGTAATGGTTT 103579 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || ||||| || ||||| Sbjct 103578 TGCCAGTCAATGTCTTCACAAAGATCTGCAT 103548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419545339096266