Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq69 93.3 4e-14 seq6139 91.5 1e-13 seq99 91.5 1e-13 seq380 89.7 4e-13 seq280 89.7 4e-13 seq244 89.7 4e-13 seq177 89.7 4e-13 seq454 84.2 2e-11 seq411 82.4 6e-11 seq82 82.4 6e-11 seq60 82.4 6e-11 >seq69 Length=1777342 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| || |||||||| || |||| | || || |||| | Sbjct 335998 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGC-CGTCTT 336056 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || || |||||||| ||| || | | ||||||||| Sbjct 336057 CCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTT 336116 Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || ||| |||| || | || || || || | |||||| ||| | ||||||| Sbjct 336117 GGATCTTC-GCTTTCACATTGTCG--ATCGTGTCTGACGACTCCACCTCTAGGGTTATGG 336173 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || |||||||| || ||||||||| Sbjct 336174 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 336208 >seq6139 Length=4094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | || | |||||| ||| |||||| || ||||||||||| || Sbjct 323 ACCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 382 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| || ||||| ||| || | || || | |||||| ||| || Sbjct 383 AAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 442 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || |||||||| || || |||| | | | | ||||| || | | |||| Sbjct 443 GATACCCTCCTTGTCTTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCA 501 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || ||||| || ||||||||||| Sbjct 502 CCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 550 >seq99 Length=1465915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | || | |||||| ||| |||||| || ||||||||||| || Sbjct 434609 ACCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 434668 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| || ||||| ||| || | || || | |||||| ||| || Sbjct 434669 AAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 434728 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | || |||||||| || || |||| | | | | ||||| || | | |||| Sbjct 434729 GATACCCTCCTTGTCTTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAACTCTCCA 434787 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || ||||| || ||||||||||| Sbjct 434788 CCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 434836 >seq380 Length=167695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| || |||||||| || |||| | || || |||| | Sbjct 104834 CACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGC-CGTCTT 104892 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || || |||||||| ||| || | | ||||||||| Sbjct 104893 CCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTT 104952 Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || ||| |||| || | || || || || | ||||| ||| | ||||||| Sbjct 104953 GGATCTTC-GCTTTCACATTGTCG--ATCGTGTCTGACGACTCGACCTCTAGGGTTATGG 105009 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || |||||||| || ||||||||| Sbjct 105010 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 105044 >seq280 Length=1980472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | || | | ||| |||||||| || ||| || || |||||||| || || Sbjct 1633038 ACCTCCTCTCAGACGGAGCACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 1632979 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || | |||| |||||||| || ||| || | || | ||||||||| ||| ||| Sbjct 1632978 GAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 1632919 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTG---ATAGACGCTATGGTATCGGTAGACTC 48675 | | ||||||||| || ||| |||| || | || || || || | ||||| Sbjct 1632918 GATCCCTTCCTTGTCTTGGATCTTC-GCTTTCACATTGTCG--ATCGTGTCTGATGACTC 1632862 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||||||||||| |||||||| Sbjct 1632861 TACCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 1632811 >seq244 Length=507168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| ||||| ||||||||||| || |||| | || ||||||| Sbjct 235924 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCA 235983 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | | |||||| ||| Sbjct 235984 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGG 236043 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| ||| ||| | || ||||| || Sbjct 236044 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTC 236103 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| || ||||| |||||||| Sbjct 236104 CCGGTGAGAGTCTTAACAAAGATCTGCAT 236132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||||| ||| || ||||| || |||||| || |||||||| ||||| Sbjct 236133 ACCACCACGAAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 236192 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | ||||| ||||| || || || | || | | |||||| ||| || Sbjct 236193 CAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGG 236252 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || || ||| | | ||||| || | ||| Sbjct 236253 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTCTCAAC 236312 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || ||||||||||| || || ||||||||||| Sbjct 236313 CTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACGAAAATCTGCAT 236360 >seq177 Length=445524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | ||| | || | |||||| ||| |||||| || ||||||||||| || Sbjct 392236 ACCTCCACGAAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 392177 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| || ||||| ||| || | || || | |||||| ||| || Sbjct 392176 AAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 392117 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | || |||||||| || || ||||| | | || ||||| || | | |||| Sbjct 392116 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAACTCTCC 392059 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || ||||| || ||||| || ||||||||||| Sbjct 392058 ACCTCCAAGGTGATAGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 392009 >seq454 Length=111167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| ||||| ||||||||||| || |||| | || ||||||| Sbjct 50131 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCA 50190 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | | |||||| ||| Sbjct 50191 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGG 50250 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | ||||| |||| ||| ||| | || ||||| || Sbjct 50251 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTC 50310 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || ||||||||||||||||| Sbjct 50311 CCGGTCAACGTCTTCACAAAAATCTGCAT 50339 >seq411 Length=621170 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || || || || ||||||||||| ||||| || | || || Sbjct 568512 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAATCTGCCAAGGTACGACCATCTTCT 568453 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| || | || || | |||||||||| || | | |||||||||| Sbjct 568452 AGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 568393 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | ||||| || | ||| ||||| || ||||| || Sbjct 568392 ATCTTCGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTG 568333 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| ||||| |||||| Sbjct 568332 CCAGTGAGTGTTTTCACGAAAATTTGCATC 568303 >seq82 Length=470516 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| || ||| ||| || || ||||||||||| ||||| || | || || Sbjct 88120 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCA 88179 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| |||||| || | || || | ||||| ||| || | | |||||||||| Sbjct 88180 AGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 88239 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | ||| ||| | || ||||| ||| Sbjct 88240 ATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTA 88299 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| ||||| |||||| Sbjct 88300 CCAGTGAGTGTTTTCACGAAAATTTGCATC 88329 >seq60 Length=318476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || ||| || || ||||||||||| ||||| || | || || Sbjct 56096 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGACCATCTTCT 56155 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| || | || || | ||||||||| || | | |||||||||| Sbjct 56156 AGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 56215 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | || || || | ||| ||||| || ||||| || Sbjct 56216 ATCTTCGCCTTAACATTGTCGATTGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTG 56275 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| |||||||| ||||| |||||| Sbjct 56276 CCAGTGAGTGTTTTCACGAAAATTTGCATC 56305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421209173084186