Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-36 seq216 143 4e-30 seq182 143 4e-30 seq670 138 2e-28 seq208 138 2e-28 seq506 134 2e-27 seq137 107 3e-19 seq136 104 4e-18 >seq5 Length=1121238 Score = 165 bits (182), Expect = 1e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || ||||| | |||||||| | ||||||| Sbjct 714250 GAGACAACATCCAAGGAATCACCAAGCCTGCGATCCGGAGGTTGGCTCGTAGAGGTGGAG 714191 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||||| ||| | |||||||| | Sbjct 714190 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGTGGTGTCCTCAAGATCTTTTTGG 714131 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| ||| | ||| ||||||||||| | | |||||||||||| Sbjct 714130 AGAACGTGATCCGTGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 714071 Query 16638 CCATGGATATCGTCTATGC 16656 ||||||| ||||||| || Sbjct 714070 CCATGGACGTCGTCTACGC 714052 >seq216 Length=3439491 Score = 143 bits (158), Expect = 4e-30 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 905810 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGTG 905869 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || || |||| || |||| |||| ||| | |||||||| | Sbjct 905870 TCAAGCGTATCAGCGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 905929 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||||||| | || ||||||||||||| | ||||| || ||| Sbjct 905930 AGAACGTTATCCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACGGTGACCG 905989 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 905990 CCATGGATGTGGTGTATGC 906008 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 1060561 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGTG 1060502 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||||| || ||| || |||| || |||| |||| ||| | |||||||| | Sbjct 1060501 TCAAGCGAATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 1060442 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| ||| || | || ||||||||||||| | ||||| || || Sbjct 1060441 AGAACGTTATCCGTGACGCCGTTACTTACACCGAGCACGCTAGGAGGAAGACGGTGACTG 1060382 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | ||||| | | |||| || || || ||| Sbjct 1060381 CCATGGATGTGGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTACGGATTCGGCGGTT 1060322 Query 16698 AA 16699 || Sbjct 1060321 AA 1060320 >seq182 Length=2297843 Score = 143 bits (158), Expect = 4e-30 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 782764 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGTG 782705 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| ||| | |||||||| | Sbjct 782704 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 782645 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| |||||||| |||||| | || ||||||||||| | | ||||| || ||| Sbjct 782644 AGAACGTTATCCGTGATGCGGTTACTTACACCGAGCACGCAAGGAGGAAGACGGTGACCG 782585 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | ||||| | | |||| || || || ||| Sbjct 782584 CCATGGATGTGGTTTATGCTCTCAAGAGACAAGGAAGGACTCTTTACGGATTCGGCGGTT 782525 Query 16698 AA 16699 || Sbjct 782524 AA 782523 Score = 138 bits (152), Expect = 2e-28 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || ||| | |||||||| | ||||| | Sbjct 639594 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGTAGATTGGCTCGTAGAGGTGGTG 639653 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| |||| ||| | |||||||| | Sbjct 639654 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGG 639713 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| |||||| | || ||||||||||| | | ||||| || ||| Sbjct 639714 AGAACGTGATCCGTGATGCGGTTACTTACACCGAGCACGCAAGGAGGAAGACGGTGACCG 639773 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || ||||| Sbjct 639774 CCATGGATGTGGTTTATGC 639792 >seq670 Length=338735 Score = 138 bits (152), Expect = 2e-28 Identities = 181/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| |||||||| || |||||||| |||||| | || |||| Sbjct 136949 GAGACAACATCCAAGGAATCACAAAGCCAGCGATACGTCGTCTCGCTCGTAGAGGAGGAG 136890 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| || ||| || |||| ||||| | | | ||| ||||||||||| ||| Sbjct 136889 TGAAACGTATCAGTGGTCTGATCTACGAAGAAACGAGAGGTGTATTGAAGATCTTTCTCG 136830 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | || || || ||||| | | |||||||| || Sbjct 136829 AGAATGTGATTAGGGATGCTGTGACGTACACTGAACACGCGAGGAGGAAGACTGTTACTG 136770 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| ||||| | ||||| | | ||||||| || || ||| Sbjct 136769 CCATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTCGGTGGTT 136710 Query 16698 AATCTTCTAAT 16708 | || |||| Sbjct 136709 GAATTTTTAAT 136699 >seq208 Length=363019 Score = 138 bits (152), Expect = 2e-28 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 1875 GAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 1816 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| ||||||| ||||| ||| | |||||||| | Sbjct 1815 TCAAGCGTATCAGTGGTCTGATCTACGAAGAGACTCGTGGTGTCCTCAAGATCTTTTTGG 1756 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||| ||| ||| | ||| ||||||||||| | | ||||||||| Sbjct 1755 AGAACGTGATCCGTGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACTGTC 1700 >seq506 Length=303225 Score = 134 bits (148), Expect = 2e-27 Identities = 187/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| |||||||| || |||||||| ||||| | || |||| Sbjct 168995 GAGACAACATCCAAGGAATCACAAAGCCAGCGATACGTCGTCTAGCTCGAAGAGGAGGAG 168936 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| || ||| || |||| ||||| | | | ||| ||||||||||| ||| Sbjct 168935 TGAAACGTATCAGTGGTCTGATCTACGAAGAAACGAGAGGTGTGTTGAAGATCTTTCTCG 168876 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| | || || || ||||||| | |||||||| || Sbjct 168875 AGAATGTGATTAGAGATGCTGTGACGTACACTGAACACGCTAGGAGGAAGACTGTTACTG 168816 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| | || ||||| ||||| | ||||| | | ||||||| || || ||| Sbjct 168815 CCATGGACGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTTTATGGATTCGGTGGTT 168756 Query 16698 AA--TCTTCTAATCAAACTTC 16716 | | || |||| ||| ||| Sbjct 168755 GAGTTTTTTTAATTAAATTTC 168735 >seq137 Length=954212 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || || || || || Sbjct 496229 GCCAAGAGGCATCGGAAAGTTCTAAGAGACAACATCCAAGGGATTACGAAACCTGCGATT 496170 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | || || || |||||| || ||| ||| |||| || |||| Sbjct 496169 CGTCGTCTCGCCAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACC 496110 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| ||| || | ||| || | || || ||| Sbjct 496109 CGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 496050 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | ||||| ||||||| || | || | ||||| Sbjct 496049 CACGCTCGCCGGAAGACAGTCACGGCGATGGACGTCGTCTACGCTCTCAAGAGACAAGGA 495990 Query 16673 CG 16674 || Sbjct 495989 CG 495988 >seq136 Length=1398723 Score = 104 bits (114), Expect = 4e-18 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| ||||||||||| || || || || || || Sbjct 817036 GCCAAGAGGCATCGGAAAGTTCTAAGAGACAACATCCAAGGGATTACGAAACCTGCGATT 816977 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | || || || |||||| | ||| ||| |||| || |||| Sbjct 816976 CGTCGTCTCGCCAGAAGAGGAGGCGTGAAGCGTACCAGTGGTTTGATCTACGAGGAGACC 816917 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| ||| || | ||| || | || || ||| Sbjct 816916 CGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 816857 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | ||||| ||||||| || | || | ||||| Sbjct 816856 CACGCTCGCCGGAAGACAGTCACGGCGATGGACGTCGTCTACGCTCTCAAGAGACAAGGA 816797 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 816796 CGCACTCTTTACGGATTCGG 816777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067715482898