Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq77 98.7 2e-15 >seq77 Length=993252 Score = 98.7 bits (108), Expect = 2e-15 Identities = 237/353 (67%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 194593 TATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCC 194652 ||||| | || ||||| || || || ||||| || || ||| || || || || Sbjct 482364 TATGTGATCCTAGCTGCAGCCAAAGTCGGTGGGATTCATGCCAACAACACATACCCAGCT 482423 Query 194653 GATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTAAT 194712 |||||||| || |||||| || ||||| ||||| || | |||| ||| || Sbjct 482424 GATTTCATTAGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTATACGCAT 482483 Query 194713 GGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTT---TCCAAAG 194769 || || |||||||| | || || || ||||||||||| || || || || ||| | Sbjct 482484 GGTGTGAAGAAACTTCTCTTCCTCGGCTCATCTTGCATTTACCCCAAATTCGCTCCTCA- 482542 Query 194770 ATACCTATTACAGAGGATCAG--TTACTTGCTAGTCCTTTGGAAGAATCTAA-TAGTGCT 194826 ||| ||| |||| ||| | | || || |||| | ||| |||| |||| Sbjct 482543 --ACCGATTCCAGA--ATCCGCTCTTCTCACTGGTCCGCTTGAACCGACTAACGAGTG-G 482597 Query 194827 TATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGA 194886 || || ||||| ||||| ||||| || | |||||||||||| || | | ||| || | Sbjct 482598 TACGCCATTGCCAAGATTGCAGGGATTAAGATGTGTCAAGCTTACAGGCTTCAGCATCAA 482657 Query 194887 TTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 | |||| || || ||||| || ||||| ||||| || |||| ||||| Sbjct 482658 TGGGATGCCATCTCCGGTATGCCCACCAATCTCTACGGTCCACATGACAATTT 482710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807472566914160