Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq279 179 5e-40 seq477 114 2e-20 seq191 96.9 4e-15 seq140 89.7 6e-13 seq127 86.0 8e-12 >seq279 Length=1218690 Score = 179 bits (198), Expect = 5e-40 Identities = 407/605 (67%), Gaps = 13/605 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||| |||||||| | || ||||||| | || |||||||| || || || | Sbjct 625135 ACACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAGTTCGTTTGAGAAAGTTAA 625076 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || || || |||||||| || |||||| ||| ||| || ||||| Sbjct 625075 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAACAGAAGCTTCCGGAGAAGAA 625016 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT 33480 ||| ||||| || ||| || |||| | || || | | | ||| || || Sbjct 625015 GATACCTTCAACGCAAGCGAAAGCAACGATTCGTTCAGCGAA----GGTCTGAGATCCGT 624960 Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| || ||||| | || ||||| |||||||| ||||| || || ||| Sbjct 624959 CGATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACACAAGGAATCGTCTCAATCGCAC 624900 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 ||||||| || | | || || | ||||| | |||||||||| | ||||||||||| Sbjct 624899 GGAAGAGATGGTCTCTCTCTTTGTTGTCTTTGATGTAAGTATCGAGAAGAAGACTATACA 624840 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || || || || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 624839 TCTCAGAGTGTATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGA 624780 Query 33659 TCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 || || || | ||| || || || | ||| || || || ||||| ||| Sbjct 624779 CTTGGACATC-GGACATGAACCGAGATGCGAGATTCTCTAGAACGATACCGTCGGAGGCA 624721 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT-TTATTC 33774 || || || || | || ||||| || || | |||| | | || | | || | | Sbjct 624720 GCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCC 624661 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 ||||| | | |||| |||| |||||||||||| | ||||| || ||||| || || Sbjct 624660 CAATCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 624601 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | |||||| | || ||||||||||| ||| ||||| | ||| Sbjct 624600 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGGG 624541 Query 33895 TTTGG 33899 |||| Sbjct 624540 GTTGG 624536 >seq477 Length=1203188 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | ||| || | ||| | || | || |||||||| |||||| Sbjct 20440 TCCTCCTTGGTCAACGTAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 20381 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| || || || || || || |||||| |||||||||| || || ||| Sbjct 20380 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTGGCACGAATGTTGTGAACTGA 20321 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || |||||||| ||| || | || || ||| |||||||||||||| Sbjct 20320 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATAGAT 20261 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 20260 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 20218 >seq191 Length=957377 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 346558 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 346499 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| || || || || || || |||||| | ||||| || || || ||| Sbjct 346498 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 346439 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || |||||||| ||| || | || || ||| ||||||||||| || Sbjct 346438 TACACCGATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 346379 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 346378 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 346336 >seq140 Length=1024829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||| ||| | ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 >seq127 Length=1358402 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 1059919 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 1059978 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || ||||| | ||||| |||||| | ||| Sbjct 1059979 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTTGCACGGATATTATGAGCTGA 1060038 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || ||||| |||| || | || || ||| | || ||||| || Sbjct 1060039 AACACCAATACCACCTGCAGATTTACTTATAACAGCACACTCTTTGAGTGTTTCATATAT 1060098 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| | | ||||||||| Sbjct 1060099 GCCCTCAATGCTATCATCTTTCATGCACACCAAAAAACAGCT 1060140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622883456927760