Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq281 93.3 4e-14 seq75 93.3 4e-14 seq525 82.4 7e-11 seq270 82.4 7e-11 >seq281 Length=1304507 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| ||||| | | || || ||||||||| Sbjct 309978 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 310037 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | | || || ||||| || ||||| |||||| | ||||| ||| || Sbjct 310038 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 310097 Query 26982 AGACTTAGAGGAGG 26995 || || ||||| || Sbjct 310098 AGGCTCAGAGGTGG 310111 >seq75 Length=1220249 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || ||||||||||| || || | | || || ||||||||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | | || || ||||| || ||||| |||||| | ||||| ||| || Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 48659 Query 26982 AGACTTAGAGGAGGAA 26997 || || ||||| |||| Sbjct 48660 AGGCTGAGAGGTGGAA 48675 >seq525 Length=802623 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| |||| ||| Sbjct 20526 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGTCA 20467 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || ||||| ||||| ||||| || || || || Sbjct 20466 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGAC 20407 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| || || ||||| || | ||| | | |||||| Sbjct 20406 CAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGACTAC 20347 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || || ||||| Sbjct 20346 AACATCCAGAAGGAGTCAACGCTTCACCTTGTCCT 20312 >seq270 Length=1109440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| |||| ||| Sbjct 20543 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTAGAGTCA 20484 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || ||||| ||||| ||||| || || || || Sbjct 20483 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGAC 20424 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| || || ||||| || | ||| | | |||||| Sbjct 20423 CAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGAACCTTAGCCGACTAC 20364 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || || ||||| Sbjct 20363 AACATCCAGAAGGAGTCAACGCTTCACCTTGTCCT 20329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478613420869920