Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq477 127 5e-24 seq140 111 4e-19 seq248 109 1e-18 seq191 109 1e-18 seq674 102 2e-16 seq180 102 2e-16 seq165 102 2e-16 seq127 102 2e-16 seq279 93.3 1e-13 seq339 89.7 1e-12 seq126 89.7 1e-12 >seq477 Length=1203188 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| |||| |||||| | || | |||||| |||| | Sbjct 20237 ATGAAGGATGATAGCATCGAGGGAATCTATGACACGTTGAAAGAGTGTGCTGTTATAAGC 20296 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 || ||||| || ||||||||||| | ||||| |||||| ||| | | |||||||| Sbjct 20297 AAATCAGCAGGGGGTATTGGTGTATCAGTTCACAACATTCGTGCCACTGGA-AGTTACAT 20355 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 20356 TCGTGGCACAAACGGAGCATCTAATGGTATTGTTCCAATGCTGCGGGTATTCAATGATAC 20415 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | ||||| ||||| || ||||| ||| | ||||| Sbjct 20416 TGCTCGTTACGTTGACCAAGGAGGAGGCAAGAGGAAAGG 20454 >seq140 Length=1024829 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| || || || | ||| ||||| || | |||||| |||| | Sbjct 727487 ATGAAAGATGATAGCATTGAAGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 727428 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| ||||| |||||||| || | || ||| |||||||| | | | |||||||| Sbjct 727427 AAATCTGCCGGCGGTATTGGTGTTTCAGTTCATAATATTCGTGCAACTGGA-AGTTACAT 727369 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || || || | ||||| ||||| ||||| || | |||| Sbjct 727368 TCGTGGCACAAATGGAACATCTAACGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 727309 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || |||||||| || ||||| ||| | |||||| Sbjct 727308 TGCTCGTTATGTCGACCAAGGAGGAGGCAAGAG-AAAGGG 727270 >seq248 Length=403725 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || || || ||||||||||| || || || || || Sbjct 23438 CAGTTCTATGTGGCAGAAGGGGAACTCTCGTGTCAAATGTATCAACGTTCAGCAGACATG 23497 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| |||||||| ||||| ||||| || ||||||||| | | |||||| Sbjct 23498 GGCCTTGGTGTGCCGTTTAACATTGCTTCCTACGCTCTTCTTACTTGCATGCTTGCTCAT 23557 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 23558 GTGTGCAATCTCGTTCCTGGTGATTTTATCCATGTTATAGGGGATGCTCATGTGTACAGA 23617 Query 111882 AACCA 111886 || || Sbjct 23618 AATCA 23622 >seq191 Length=957377 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | |||||| | || | |||||| |||| | Sbjct 346355 ATGAAGGATGATAGCATCGAGGGAATATATGACACGTTGAAAGAGTGTGCTGTTATAAGC 346414 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||||| || || |||||||| | ||||| | |||||| | | | |||||||| Sbjct 346415 AAATCAGCAGGGGGTATCGGTGTATCAGTTCACAACATCCGTGCAACTGGA-AGTTACAT 346473 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 346474 TCGTGGCACAAACGGAGCATCTAATGGTATTGTTCCAATGCTGCGGGTATTCAATGATAC 346533 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || ||||| || ||||| ||| | ||||| Sbjct 346534 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGGAAAGG 346572 >seq674 Length=261080 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || || || ||||||||||| || || || || || || |||||||| |||||||| ||| Sbjct 144510 CTCTCGTGTCAAATGTATCAACGTTCAGCAGACATGGGCCTTGGTGTGCCGTTTAACATT 144451 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845 || ||| | || ||||||||| | | |||||| | |||||| || ||||| Sbjct 144450 GCTTCCTACTCTCTTCTTACTTGCATGCTTGCTCATGTGTGCAATCTCGTTCCTGGTGAT 144391 Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || || || ||||| || ||||| ||||| |||| ||| || Sbjct 144390 TTTATCCATGTTATAGGGGATGCTCATGTGTACAGAAATCA 144350 >seq180 Length=4117863 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | |||| |||||||| || | | | || || || ||| || |||| Sbjct 3608345 ATGTAATTAACAAAATCAAGAACAATCCTGATGATAGACGAATCATAATGTCAGCTTGGA 3608286 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTAT 111710 |||| || || | ||||||||||| ||||| || | | | ||| ||||||||| Sbjct 3608285 ACCCTCCTGATCTGAAGTTGATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTAT 3608227 Query 111711 GTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 || | || |||||||| |||||||||||||| || || ||||| ||||| ||| Sbjct 3608226 GTTGCAAATGGAGAACTTTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGT 3608167 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || ||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 3608166 GTACCATTTAACATTGCCTCATACTCTCTTCTTACATGCATTCTCGCTCA 3608117 >seq165 Length=664114 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || ||||| Sbjct 156323 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTATGTTGCAAATGGAGAACTTTC 156265 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| ||||| || ||||| ||||| Sbjct 156264 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGTGTACCATTTAACATTGCCTC 156205 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||||||| | ||||||| Sbjct 156204 ATACTCTCTTCTTACTTGCATTCTCGCTCA 156175 >seq127 Length=1358402 Score = 102 bits (112), Expect = 2e-16 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| ||||| || | |||||| |||| Sbjct 1060122 ATGAAAGATGATAGCATTGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGT 1060063 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || |||||| || |||||||| || || ||| | |||||| | | | |||||||| Sbjct 1060062 AAATCTGCAGGTGGTATTGGTGTTTCAGCTCATAATATCCGTGCAACCGGA-AGTTACAT 1060004 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| ||||| || | |||| Sbjct 1060003 TCGTGGCACAAATGGAACATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATAC 1059944 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 1059943 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 1059905 >seq279 Length=1218690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 |||||| ||||| |||||||||||||| || ||| |||| |||||||| |||||||| || Sbjct 625345 TAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACCAACTTCTTCGAGAA 625404 Query 22917 AAGAGTTGGTGAATACCAAAAAGC 22940 | | ||||| || |||||||| || Sbjct 625405 ACGCGTTGGCGATTACCAAAAGGC 625428 >seq339 Length=148954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 |||||| ||||| |||||||||||||| || ||| |||| ||||| || |||||||| || Sbjct 22995 TAATCCTTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAGACTAACTTCTTCGAGAA 23054 Query 22917 AAGAGTTGGTGAATACCAAAAAGC 22940 | | ||||| || |||||||| || Sbjct 23055 ACGCGTTGGCGATTACCAAAAGGC 23078 >seq126 Length=830300 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACATTCGCG 363745 ||| ||||| |||||||| || | || ||| |||||||| | | | ||||||||||| | Sbjct 568535 TGCTGGCGGTATTGGTGTTTCAGTTCATAATATTCGTGCAACTGGA-AGTTACATTCGTG 568477 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 ||||| ||| || ||||| | ||||| ||||| ||||| || | ||||||| Sbjct 568476 GCACAAATGGAACATCTAATGGTATTGTTCCAATGCTGCGTGTATTCAATGATACTGCTC 568417 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 | || || ||||| || ||||| ||| | |||||| Sbjct 568416 GTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 568383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303216900201452