Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq267 105 6e-18 seq6139 98.7 9e-16 seq454 98.7 9e-16 seq99 98.7 9e-16 seq82 98.7 9e-16 seq411 95.1 1e-14 seq75 95.1 1e-14 seq61 95.1 1e-14 seq244 89.7 4e-13 seq177 89.7 4e-13 seq384 87.8 2e-12 seq325 87.8 2e-12 seq281 84.2 2e-11 >seq267 Length=1500311 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| ||| | ||||| | ||||| ||| | Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 618126 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAG 618067 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | ||||||||||||||||||| | | || || | | ||||| || Sbjct 618066 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTGCG-GATTACAA 618008 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||| || ||| | || || || Sbjct 618007 CATCCAGAAAGAGTCAACACTACACTTGGT 617978 >seq6139 Length=4094 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| ||||||| |||| || ||| Sbjct 550 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 491 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| || || || ||||| || || Sbjct 490 GACACCATCGACAACGTTAAAGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 431 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||||||||| || | ||||| | | |||||| ||| Sbjct 430 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAAC 371 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 370 ATCCAGAAGGAGTCCACCCTTCAT 347 >seq454 Length=111167 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 50795 ATGCAGATCTTCGTCAAAACCCTTACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 50736 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || ||| || || || || ||||| || || || Sbjct 50735 GACACCATCGACAATGTCAAAGCTAAAATTCAAGATAAGGAGGGAATACCACCAGACCAG 50676 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | || || |||||||| ||||| | ||| | | | || || ||||| Sbjct 50675 CAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGACGGCAGGA-CTTTGGCTGACTATAA 50617 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || |||||| |||| || || || Sbjct 50616 CATTCAGAAGGAGTCTACACTTCACTTGGTCTT 50584 >seq99 Length=1465915 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| ||||||| |||| || ||| Sbjct 434836 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTGGAGAGTTCT 434777 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| || || || ||||| || || Sbjct 434776 GACACCATCGACAACGTTAAAGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 434717 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||||||||| || | ||||| | | |||||| ||| Sbjct 434716 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAAC 434657 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 434656 ATCCAGAAGGAGTCCACCCTTCAT 434633 >seq82 Length=470516 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || | || |||||| | Sbjct 88328 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 88269 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 88268 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 88209 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || || ||||||| | | | | | |||||| ||| Sbjct 88208 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 88149 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || || | ||||| || | | || ||||| || Sbjct 88148 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGG 88102 >seq411 Length=621170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || |||| || ||| | Sbjct 568304 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 568363 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| |||||||| ||||| ||||| Sbjct 568364 GACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 568423 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || || || || || ||||||| | | | | ||||| ||| Sbjct 568424 CAGAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGTCGTACCTTGGCAGATTACAAC 568483 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || |||| || || | | || ||||| || Sbjct 568484 ATCCAGAAAGAATCGACCCTTCACTTGGTTCTCCGGTTAAGAGGTGG 568530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || ||| | ||||| ||| | Sbjct 569216 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCTTGGAAGTTGAGAGCTCA 569275 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||| ||||| || || || || ||| Sbjct 569276 GACACAATTGATAACGTCAAAGCTAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 569335 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | | || || || ||||| |||| | ||| ||| ||||| || Sbjct 569336 CAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGTCG-CACGCTAGCGGATTACAA 569394 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||| || |||| | ||||| Sbjct 569395 TATCCAAAAGGAATCAACCCTTCACCTTGTGTT 569427 >seq75 Length=1220249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || |||||||| || ||||| | | || |||||||||||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | | ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 48659 Query 24204 AGATTGAGAGGAGGA 24218 || ||||||| ||| Sbjct 48660 AGGCTGAGAGGTGGA 48674 >seq61 Length=1440766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||| | ||||| || | || || | || |||||| | Sbjct 1073428 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTTGAGGTCGAGAGCTCT 1073487 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| |||| |||||||| ||||| || || Sbjct 1073488 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAGGGAAGGCATTCCTCCGGACCAG 1073547 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || || ||||||| | | | | | |||||| ||| Sbjct 1073548 CAAAGATTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACCTTGGCCGATTACAAC 1073607 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || || | ||||| || | | || ||||| || Sbjct 1073608 ATCCAGAAAGAGTCCACCCTCCATTTGGTTCTCCGTTTAAGAGGTGG 1073654 >seq244 Length=507168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 236588 ATGCAGATCTTCGTCAAAACCCTTACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCT 236529 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || ||| || || || || || || || || || Sbjct 236528 GACACCATCGACAATGTCAAAGCTAAAATTCAAGATAAGGAGGGTATCCCACCAGACCAG 236469 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | || || |||||||| ||||| | ||| || | || || ||||| Sbjct 236468 CAGAGATTGATCTTCGCTGGAAAGCAACTTGAAGACGGCAG-GACTTTGGCTGACTATAA 236410 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || |||||| |||| || || || Sbjct 236409 CATCCAGAAGGAGTCTACACTTCACTTGGTCTT 236377 >seq177 Length=445524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| | || ||| | || || ||| Sbjct 392009 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAGACTATCACCTTGGAGGTGGAGAGTTCT 392068 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 392069 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 392128 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||||||||| || | ||||| | | |||||| ||| Sbjct 392129 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGCAGAACCCTTGCCGATTACAAC 392188 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 392189 ATCCAGAAGGAGTCCACCCTTCAT 392212 >seq384 Length=798633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | |||||| | ||||||||| Sbjct 646320 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATTACCCTAGAAGTCGAGAGTTCA 646379 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 646380 GACACAATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 646439 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACG---TCAGCGATTAT 24167 |||||||| || | || ||||| || || || |||| | |||| ||| ||||| Sbjct 646440 CAGAGACTAATCTTCGCTGGCAAACAGCTTGAGGATGGTCG-AACGCTTTCA--GATTAC 646496 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || |||||||| || |||| | || | || ||||||| || Sbjct 646497 AACATCCAGAAAGAATCAACCCTTCACCTTGTACTTCGACTGAGAGGTGG 646546 >seq325 Length=1091643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || ||| | |||| | ||||| ||| | Sbjct 551839 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCT 551898 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| ||||| || | || || || Sbjct 551899 GACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCTACCGGACCAG 551958 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA- 24169 || ||||| || || | |||||||||||||| |||| ||| | | ||||| || Sbjct 551959 CAAAGACTTATCTATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTACAAG 552018 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || || ||| |||| || || | || ||||||||||| Sbjct 552019 GGTTCAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGAGAGGAGG 552066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | || || | ||||| || | Sbjct 552068 ATGCAAATCTTTGTTAAGACCCTTACTGGCAAGACCATAACTCTTGAAGTTGAAAGCTCT 552127 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| ||||| |||||||| |||| || || Sbjct 552128 GACACGATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCACTCCGGACCAG 552187 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | ||||||||||||||| ||| | | || || | | ||||| || Sbjct 552188 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAGGATGGTCGGACACTTGCG-GATTACAA 552246 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||| || || | ||||| || Sbjct 552247 CATCCAGAAAGAGTCAACTCTGCATTTGGT 552276 >seq281 Length=1304507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || |||||||| || || || | | || |||||||||||| Sbjct 309978 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 310037 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | | ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 310038 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 310097 Query 24204 AGATTGAGAGGAGG 24217 || | ||||| || Sbjct 310098 AGGCTCAGAGGTGG 310111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893106628830