Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq325 89.7 4e-13 seq75 87.8 2e-12 seq60 87.8 2e-12 seq267 84.2 2e-11 >seq325 Length=1091643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| || |||||||||| | ||| ||| | Sbjct 551839 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTATTCTAGAAGTTGAGAGCTCT 551898 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCC--CCGTTGAT 115402 ||||| ||| |||| || || || || || || ||||| ||| ||| || Sbjct 551899 GACACCATTG-ACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCTACCG--GAC 551955 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||||||||| ||||||||||| ||| | || |||| |||| | || ||||| Sbjct 551956 CAGCAAAGACTTATCTATGCGGGCAAGCAACTCGAGGATGGTCGAACCCTTGCTGATTAC 552015 Query 115463 AA-CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||| || ||||| || | || |||| | || ||| ||||||| Sbjct 552016 AAGGGTTCAGAAGGAGTCAACACTTCACTTGGTTCTTAGGTTGAGAGGAGG 552066 >seq75 Length=1220249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| ||||| || || | ||| || || ||| | ||||||| | |||| |||| || Sbjct 48560 TGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAAGATGGCCGAACCTTGGCTGA 48619 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| || |||||||||||| | ||| | || ||||| || |||| |||| Sbjct 48620 TTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTGAGGCTGAGAGGTGGAA 48675 >seq60 Length=318476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 ||||| || ||||| || ||| | || || |||||||| ||| |||| ||| | || Sbjct 56076 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCA 56017 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| ||| |||| || || || || |||||||| || |||| ||| Sbjct 56016 G--ACACTATTG-ACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGAT 55960 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| |||||||| | ||| || ||||||||||| |||| || | || || || Sbjct 55959 CAGCAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTAGCTGACTAC 55900 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || || |||||||| ||| | ||| ||||| Sbjct 55899 AATATCCAGAAAGAGTCCACTCTCCATTTGGTG 55867 >seq267 Length=1500311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| || ||||||||||| | ||| |||| | Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || || || || || ||||| | || || || Sbjct 618126 GACAC-AATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCA 618068 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| ||||| ||| | ||||||| || | || ||||| || Sbjct 618067 GCAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTGCGGATTACAA 618008 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||||||| || |||| |||| Sbjct 618007 CATCCAGAAAGAGTCAACACTACACTTGGT 617978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425301564758320