Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq127 95.1 2e-14 seq140 89.7 7e-13 >seq127 Length=1358402 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| || || || | |||||||| || |||||||||||| | | ||| | | || Sbjct 1060277 AGTTCCAGCGTTGAAGAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATG 1060336 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | || || || || ||||| | ||| ||||| || || || || | ||| | Sbjct 1060337 GTAAGTTTGGATTGCGGAATCAATATCATCCTTG-TGAATGCCCACAGCTACCCTCATCA 1060395 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCC 63643 |||||| ||||| |||||||| | ||| | || | ||| || | ||| ||| | || Sbjct 1060396 GCATGTGTTGAGGCCTTTCAAC-AACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCA 1060454 Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | ||||||||| ||||| | | ||| ||| || || || || || || Sbjct 1060455 AGAGTTTTAAATCCAAAGAAATCATATTCAAAATCACGATCATAGATTAT 1060504 >seq140 Length=1024829 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 727284 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 727343 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || ||||| ||||| || || || || |||||| | |||||||||||| || ||| Sbjct 727344 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 727403 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 727404 AACACCAATACCGCCGGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 727463 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| | ||||| ||||| Sbjct 727464 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 727505 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| || || || | |||||||| || |||||||||||| | | ||| | | || | Sbjct 727611 GTTCCAGCGTTGAAAAGAGTAGGAGATGCATGAGTAAACCATCTCTGAGACATCAAATGG 727670 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || ||||| ||||| | ||| ||||| || || || || | ||| | Sbjct 727671 TATGTTTGGATTGCGGAGTCAATATCATCCTTG-TGAATGCCAACAGCTACCCTCATCAG 727729 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| || ||||| | || | | ||| || | ||| ||| | || | Sbjct 727730 CATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAG 727789 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||||| || || | | ||| ||| || || || || || || Sbjct 727790 AGTTTTAAATCCGAAGAAATCATATTCAAAATCACGATCATAGATTAT 727837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633567163605600