Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq134 89.7 4e-13 seq233 86.0 5e-12 >seq134 Length=106205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| |||||||||||||| |||| || | Sbjct 49143 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 49084 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| ||||| |||| ||||| Sbjct 49083 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 49024 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| || || || || || ||| | || | || ||||| || Sbjct 49023 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 48964 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| ||||| || ||| | ||| | ||||| | ||||| Sbjct 48963 ATTCAAAAAGAGTCTACTCTCCATCTTGTGCTTCGTCTCAGAGGTGG 48917 >seq233 Length=166549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| |||||||||||||| |||| || | Sbjct 103548 ATGCAGATCTTTGTGAAGACATTGACTGGCAAAACCATTACTTTGGAGGTTGAGAGCTCT 103607 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| ||||| |||| ||||| Sbjct 103608 GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 103667 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| || || || || || ||| | || | || ||||| || Sbjct 103668 CAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAAC 103727 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || ||||| || ||| | ||| | ||||| | ||||| Sbjct 103728 ATCCAAAAGGAGTCTACTCTCCATCTTGTGCTTCGTCTCAGAGGTGG 103774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422997794621200