Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq134 98.7 7e-16 seq454 91.5 1e-13 seq267 91.5 1e-13 seq325 89.7 4e-13 seq281 84.2 2e-11 seq187 84.2 2e-11 seq75 84.2 2e-11 seq60 84.2 2e-11 >seq134 Length=106205 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||||| || || || || |||||| |||| || | || Sbjct 48231 ATGCAAATCTTTGTGAAAACATTGACAGGGAAGACTATTACCTTGGATGTTGAGAGCTCA 48172 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| || ||| || |||||||| | || | |||| Sbjct 48171 GACACAATTGATAACGTCAAGGCTAAGATTCAGGACAAAGAGGGGATCCCACCAGACCAG 48112 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||||||||| ||||| || || || ||| |||| |||||||| Sbjct 48111 CAGAGACTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGGACTTTGGCTGATTACAAC 48052 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| ||||| || |||| | ||| | || || || Sbjct 48051 ATTCAAAAGGAATCAACTCTCCACTTGGTTCTTCGTCTTCGTGGTGG 48005 >seq454 Length=111167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| ||||| ||||| |||| | |||| |||||| | ||||| ||||| || Sbjct 50711 AAAATTCAAGATAAGGAGGGAATACCACCAGACCAGCAGAGATTGATCTTCGCTGGAAAG 50652 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| ||||| | ||| |||| || || || ||||||||||| ||||| ||||| Sbjct 50651 CAACTTGAAGACGGCAGGACTTTGGCTGACTATAACATTCAGAAGGAGTCTACACTTCAC 50592 Query 22038 ATGGTATTACGTTTACGAGGAGG 22060 |||| || ||| | || ||||| Sbjct 50591 TTGGTCTTGCGTCTCCGTGGAGG 50569 >seq267 Length=1500311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||||||||||||||| || |||||||| |||||| ||| | || |||| Sbjct 617615 ACCAACAGAGACTTATCTTTGCCGGAAAACAACTCGAAGATGGTCGCACTTTAGCAGATT 617556 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||||| ||||| ||||| |||||||| Sbjct 617555 ACAATATCCAGAAAGAATCAACTCTTCA 617528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || |||||||||||||| | ||| ||| | || Sbjct 618186 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACTCTAGAAGTGGAGAGCTCA 618127 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || || || | ||| |||| Sbjct 618126 GACACAATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAG 618067 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| ||||| ||||| |||||| || | || |||||||| Sbjct 618066 CAGAGACTTATCTTTGCCGGCAAGCAACTCGAAGATGGTCGGACACTTGCGGATTACAAC 618007 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || || || || || |||| | ||| | || || || Sbjct 618006 ATCCAGAAAGAGTCAACACTACACTTGGTTCTTCGTCTTCGTGGTGG 617960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||||||||| ||||| |||||||| |||||| || |||| || | Sbjct 618527 ACCAGCAGAGACTTATCTTCGCTGGTAAACAACTTGAAGATGGCCGTACATTGGCTGACT 618468 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||||| || ||||| || |||| Sbjct 618467 ACAATATTCAGAAGGAGTCAACTCTACACTTGGT 618434 >seq325 Length=1091643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||||||||||||||| || ||||| |||||| ||| |||| |||| Sbjct 551726 ACCAGCAGAGACTTATCTTTGCTGGTAAGCAACTTGAAGATGGTCGTACTTTGGCGGATT 551785 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||| ||||| || ||||| || |||| Sbjct 551786 ACAATATTCAAAAGGAGTCAACTCTACACTTGGT 551819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || |||||||||||||| || | ||| || | | Sbjct 552524 ATGCAGATTTTTGTCAAGACTTTGACGGGCAAAACCATCACTCTAGAAGTCGAGAGCTCT 552583 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | | ||| || ||| || ||||| || | ||| | || Sbjct 552584 GATACGATTGATAACGTGAAGGCCAAGATTCAAGACAAAGAAGGGATCACACCGG---AC 552640 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||| || |||||||| |||||| ||| | ||||||||| Sbjct 552641 CAGCAGAGACTAATCTTTGCCGGGAAACAACTCGAAGATGGTCGAACACTTGCCGATTAC 552700 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 ||||| ||||| || || |||||||| Sbjct 552701 AATATCCAGAAAGAGTCGACTCTTCA 552726 >seq281 Length=1304507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| |||| | ||||| || || ||||||||||| || ||||| ||| Sbjct 309978 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAGCAACTCGAA 310037 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| |||||||| || ||||| || |||||||||||| | || || Sbjct 310038 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 310096 >seq187 Length=905850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | |||||||| || || |||||||| |||||||| ||| Sbjct 508562 GACAAAGAGGGGATACCACCGGATCAACAGAGGCTGATATTTGCTGGTAAACAACTCGAA 508503 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| | ||| | || ||||||||||| ||||| || || |||||||| |||| || Sbjct 508502 GATGGACGAACACTTGCTGATTACAATATCCAGAAAGAGTCGACTCTTCACTTGGTCTT 508444 >seq75 Length=1220249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| |||| | ||||| || || ||||||||||| || ||||| ||| Sbjct 48540 GACAAAGAGGGTATACCACCTGATCAACAAAGGCTGATCTTTGCTGGTAAGCAACTCGAA 48599 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||| ||| |||| |||||||| || ||||| || |||||||||||| | || || Sbjct 48600 GATGGCCGAACCTTGGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 48658 >seq60 Length=318476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||||||||| ||| | || || || Sbjct 56076 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGTTCA 56017 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || ||||||||||| | || | || Sbjct 56016 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 55957 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||||||||||||||||| || |||||| |||| ||| | | |||| || || |||| Sbjct 55956 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTA--GCTGACTACA 55899 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| ||||| || || ||||| ||| |||| | ||| | |||| || Sbjct 55898 ATATCCAGAAAGAGTCCACTCTCCATTTGGTGCTTCGTCTCAGAGGTGG 55850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358089071007844